Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1787 ATGGCGAAAGCATTATATCTAACTCAGGTGTCGTATCTCTTCTTATATAATTCCAGAGGTATGGCCTCTGCAAGAGTTTTCTGTCAAACGCTTCCCTTTACAAAATTGACATCCTTCAGCAAAATAAATACGTTCTCTCTATGGCCCTCCTCACGAACCTTGTCCACCACACCCACCCCATACCCACTTCAATACGAGATGATCATCAGCCGTCCAGCTAAGTCTGAGTTTGCCCATCCCCGCCGTCGACCTGTTCGACAAAATGACTCCAATTCAGAGAGCCTCCCTGAATCGGATCCACCGGAAGAATCCATTTCAGAATTAGGATTAGATAGTTGGGTCGACAGGAAACTGACTTCTGAGAAGGAAACTGAACAACCCAGTTCCCAAAATTTGGAGCTTGACAAGGCTAAGAGGAAATATTACAGAAAACGGAGGAAGAGAATGTATGGGTCAGACTCAGATGAAGAAAATAGGCGACCTGAAGAGAAATTCGTGGAGCTGAAGCCTGAGGTGGTGGAGCTTCCTACATTGCACAAGAGGGAGGAGGAATTGTATTTCTATGATACGTTTTCTTACCCGTGGGAAAAGGAGAAGCATTATAAGATGGTTTATCAGTTGGAGAAGAAGTATTTTCCTGATCAGTGTCTTGATAAAGCATTCCTTGAACCGGGAGAATCAAATACGAACGTGAAAGTAAATGCGGATGTAAAGAGCAAGTTGAAGGAAAAGAAGAAAGTCAGAGGAGACAGAAGGGAGAAAAAAGATGATGTTAGTGATGAAAGAGATGATAAGAAGTTGATGTTCTTCGATGAGAAAGAAGAAGATAAGAATAATGGGGAGTTGGTTAAGGATGCAAAAAAAGATCTAACGGAAAAGAAGGTCGAGGAGTTCTTTAAGTATTTGAAGAAGGTTCCGAACAAGGATGTTGAAGTTGGTAATGCAAAACCATATCTTGTGTCAAGGAGTACTGGGCTCCCTCCCACATGGGATGTTCCGCATGGCGCCGTTGTTTTGGTGAATAAACCCAAAGGTTGGACTTCTTTTACAGTTTGCGGAAAGCTGCGTCGCATAGTCAAAGTTAAAAAGGTAGGTCATGCTGGAACACTTGATCCTATGGCTACGGGTTTATTGATTGTTTGTGTTGGTAAAGCAACAAAACTGGTAGAGAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCCTAGGGGAGGCTACTTCAACATGGGATGCTGATTCAGAGGTCATTCAGCGAGAGCCATGGGAACACATCAAAGATGAGGACATAAAGAGAACTGCAGCATCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCCATGTTCTCTGCTATTAAAGTTGGAGGTGAGAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGTATTGAACTTTCACCTCGACGAATATCGATTTTCCAGTTTGACATAGAGAGTAGTTTGGATGACAGACAAAATTTGATTTTTCGGGTAACATGTTCTAAAGGGACTTATATTCGGTCACTATGTGCAGATTTTGGGAAGGCTCTTGGCAGTTGTGCTCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAATATTCAGCAGATGATGCATGGGAGTTCCAAGAGCTAGAAGAGGCTATTTCCAAAAATTATTTCTAA 1665 0.4246 MAKALYLTQVSYLFLYNSRGMASARVFCQTLPFTKLTSFSKINTFSLWPSSRTLSTTPTPYPLQYEMIISRPAKSEFAHPRRRPVRQNDSNSESLPESDPPEESISELGLDSWVDRKLTSEKETEQPSSQNLELDKAKRKYYRKRRKRMYGSDSDEENRRPEEKFVELKPEVVELPTLHKREEELYFYDTFSYPWEKEKHYKMVYQLEKKYFPDQCLDKAFLEPGESNTNVKVNADVKSKLKEKKKVRGDRREKKDDVSDERDDKKLMFFDEKEEDKNNGELVKDAKKDLTEKKVEEFFKYLKKVPNKDVEVGNAKPYLVSRSTGLPPTWDVPHGAVVLVNKPKGWTSFTVCGKLRRIVKVKKVGHAGTLDPMATGLLIVCVGKATKLVERYQGMIKGYSGVFRLGEATSTWDADSEVIQREPWEHIKDEDIKRTAASFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDIESSLDDRQNLIFRVTCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYSADDAWEFQELEEAISKNYF 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1787 554 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 210 552 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bisa03g1787 554 MobiDBLite consensus disorder prediction 118 137 - -
Bisa03g1787 554 MobiDBLite consensus disorder prediction 75 106 - -
Bisa03g1787 554 Hamap tRNA pseudouridine synthase B [truB]. 334 554 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bisa03g1787 554 Pfam TruB family pseudouridylate synthase (N terminal domain) 356 506 IPR002501 GO:0006396
Bisa03g1787 554 CDD PseudoU_synth_EcTruB 337 548 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bisa03g1787 554 NCBIfam tRNA pseudouridine(55) synthase TruB 336 545 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Bisa03g1787 554 Gene3D Pseudouridine synthase 332 553 - -
Bisa03g1787 554 FunFam tRNA pseudouridine synthase B 331 553 - -
Bisa03g1787 554 Pfam tRNA pseudouridylate synthase B C-terminal domain 507 550 IPR032819 -
Bisa03g1787 554 SUPERFAMILY Pseudouridine synthase 336 549 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1787 Bisa-ChrBisa03 24384702 24391362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1787 302 528 NAC Transcription Factor Family AT3G57150 31.718 6.93e-21 94.4