Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1785 ATGTCGTTATCGGACATTGTCTTCAACATCTTGGAGAACTCGAAGGAACTTGATCGCTTAAGGAAAGAGCAAGACATCGTGCTCGGCGAGATCAACAAGATGCACAAGAAACTTAAAGCCAGCGGATTTAGTCCTGAGCAGTGTGTCTGGTTGATTAGAAGTGGACAAGGGGATGTTCTTGATTCTTTTGATGGTGTTTTGATCATATATTTAGCTCCCGAGATTGTTGAGAAGCCTGGGGATAGCTCATTATCAGAGCTGAAGACATTGTACACTCAAGCAAAAGAGCTATCAGAGAGTGAAGAAAAGAAAAGCTGTATCCCTTCTTTATCTTATATGTTGGAAGGAGAATGGAACCCAGTGCTGGCTATACCCACAAAACCCATAACTTCTGACACCATTCATGTTGCAGAAGGTAATGAGAAGAAAAGAAAGCGGATGAAGACAGATTCGGATATCTCAAGGCTATCAGCTAGCCTTAAGGGTGAACAGGTAGCAGCCAGGGTCACTCCAGATAATGCTGATAAGGACGAATGGTTTGTTGTAAAAGTGATCCATTTTGATAAGGAGACAAAAGAATTTGAAGTACTAGATGAAGAACCTGGCGATGATGAAGAGGGCAGTGGCCAGAGACAATACAAGCTTCCAGTGTCAAATATCATTCCTTTCCCCAAGAGGAACGACCCTTCTAATGCCCCAGATTTCCCTCATGGAACACATGTTTTGGCAGTCTATCCGGGAACTACTGCACTTTATAAAGCAACAGTTGTCAATGGCCACCGCAAGGCCTGGACCCATGCGATCCCAAACCCCTTTCACGTTTCAAATTCCTCTGTTGTGCTTTTGTTCCTTGTTTTCTCCGCTCGACACTTCGCGGTCTCAGTCACACTCACGCACACACTCTCGCCCTCCTCTCGACCTGATTCCATGGCCTCCATTGTCGGATCGCCTTCTTCAACTTCTCCCGCAATGCTCCTTCTTAGACCTTCTTCATCCTCTCAATCAGTCTCTATCTCTACGCATCTCTTTCTCTCCAATCCCGGTCTAACTCCAAAATCCCTATCTTCCAGACTCTACTCTGCCTTCTTGTCCTCCTCTTTCGTCGCCGGCGAATCTTCCGTCTTCCGCCACTCCCTTTTCTCTTCTCCGGCATTTGTAGATTCCTCCCCCCGCCGACGGTCCCTGATCGTCCGAGCAGCCAGAGGAAAGTTCGAGAGAAAGAAGCCTCACGTTAATATAGGCACGATCGGTCACGTTGACCATGGAAAGACTACTCTCACGGCTGCTCTTACCATAGCTCTGGCCTCTATGGGTAATAGCGCACCGAAGAAGTACGACGAAATCGATGCAGCACCGGAGGAAAGGGCCCGAGGGATCACTATTAATACTGCTACGGTGGAATACGAAACTGAGAGCAGGCATTACGCCCATGTTGATTGTCCTGGGCATGCTGATTATGTGAAGAATATGATCACCGGTGCGGCGCAAATGGACGGTGCGATTTTGGTTGTTTCTGGTGCTGATGGGCCAATGCCTCAGACCAAAGAGCACATTCTGTTGGCGAAACAAGTAGGTGTGCCCAATTTGGTTGTTTTCTTGAATAAGCAGGATCAGGTTGATGATGAAGAGCTTCTTCAACTGGTGGAGTTGGAAGTCCGAGAGCTTTTGACCTTGTATGAATTCCCGGGTGATGATGTGCCGATAGTTTCAGGGTCGGCATTGTTGGCTTTAGAGGCACTGATGGCCAATCCAAAAATTAAAAAGGGGGAGAACCAGTGGGTGGATAAAATTTATGGATTGATGGATGCTGTAGATAGTTACATACCAATTCCACAGCGACAAACCGATTTACCTTTCCTCATGGCAATTGAAGATGTGTTTACGATTACTGGTCGTGGAACTGTGGCGACAGGGCGTGTTGAGAGGGGCACAGTTAAGGTTGGGGACTCTGTGGATATAGTAGGCCTCAAGGAAACCCGGACTACAACAGTTACTGGGGTTGAAATGTTTCAGAAAATACTTGATGAAGCGCTTGCAGGTGACAACGTGGGGCTTTTGCTTAGGGGAACTCAGAAAACAGATATTCAAAGAGGCATGGTTATTGCCAAACCCGGCACCATAACACCGCATTCAAAGTTCACTGCTATCGTCTATGTGTTGAAAAAGGAGGAGGGAGGGCGGCATTCACCTTTCTTTGCTGGATACAGGCCTCAATTCTTCATGAGGACCACTGATGTCACTGGGAAGGTTTCCAAAATCATGAATGATAAGGATGAAGAATCTAAGATGGTTATGCCTGGTGACCGTGTGAAGATGGTTGTAGAGCTAATTTTCCCAGTGGCTTGTGAACAGGGAATGAGATTTGCAATTCGAGAAGGTGGGAAGACTGTTGGAGCTGGTGTCATTCAGTCCATTGTTGAATGA 2424 0.4674 MSLSDIVFNILENSKELDRLRKEQDIVLGEINKMHKKLKASGFSPEQCVWLIRSGQGDVLDSFDGVLIIYLAPEIVEKPGDSSLSELKTLYTQAKELSESEEKKSCIPSLSYMLEGEWNPVLAIPTKPITSDTIHVAEGNEKKRKRMKTDSDISRLSASLKGEQVAARVTPDNADKDEWFVVKVIHFDKETKEFEVLDEEPGDDEEGSGQRQYKLPVSNIIPFPKRNDPSNAPDFPHGTHVLAVYPGTTALYKATVVNGHRKAWTHAIPNPFHVSNSSVVLLFLVFSARHFAVSVTLTHTLSPSSRPDSMASIVGSPSSTSPAMLLLRPSSSSQSVSISTHLFLSNPGLTPKSLSSRLYSAFLSSSFVAGESSVFRHSLFSSPAFVDSSPRRRSLIVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTIALASMGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNLVVFLNKQDQVDDEELLQLVELEVRELLTLYEFPGDDVPIVSGSALLALEALMANPKIKKGENQWVDKIYGLMDAVDSYIPIPQRQTDLPFLMAIEDVFTITGRGTVATGRVERGTVKVGDSVDIVGLKETRTTTVTGVEMFQKILDEALAGDNVGLLLRGTQKTDIQRGMVIAKPGTITPHSKFTAIVYVLKKEEGGRHSPFFAGYRPQFFMRTTDVTGKVSKIMNDKDEESKMVMPGDRVKMVVELIFPVACEQGMRFAIREGGKTVGAGVIQSIVE 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1785 807 PANTHER ELONGATION FACTOR TU-RELATED 376 806 - -
Bisa03g1785 807 CDD EFTU_III 708 802 - -
Bisa03g1785 807 Pfam Elongation factor Tu C-terminal domain 706 805 IPR004160 -
Bisa03g1785 807 SUPERFAMILY Translation proteins 613 709 IPR009000 -
Bisa03g1785 807 Gene3D Translation factors 746 806 - -
Bisa03g1785 807 Gene3D - 163 226 - -
Bisa03g1785 807 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 706 806 IPR009001 -
Bisa03g1785 807 NCBIfam elongation factor Tu 400 807 IPR004541 GO:0003746|GO:0005525|GO:0006414
Bisa03g1785 807 CDD EF_Tu 409 611 IPR041709 -
Bisa03g1785 807 NCBIfam small GTP-binding protein domain 411 543 IPR005225 GO:0005525
Bisa03g1785 807 Gene3D - 400 611 IPR027417 -
Bisa03g1785 807 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 634 IPR027417 -
Bisa03g1785 807 Pfam SGF29 tudor-like domain 161 262 IPR010750 -
Bisa03g1785 807 Coils Coil 805 807 - -
Bisa03g1785 807 MobiDBLite consensus disorder prediction 195 214 - -
Bisa03g1785 807 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 449 464 IPR031157 -
Bisa03g1785 807 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 408 612 IPR000795 GO:0003924|GO:0005525
Bisa03g1785 807 Pfam Elongation factor Tu GTP binding domain 408 609 IPR000795 GO:0003924|GO:0005525
Bisa03g1785 807 CDD Tudor_SGF29_rpt1 161 227 IPR047288 -
Bisa03g1785 807 FunFam Elongation factor Tu 746 806 - -
Bisa03g1785 807 Pfam Elongation factor Tu domain 2 633 701 IPR004161 GO:0005525
Bisa03g1785 807 Gene3D Translation factors 614 742 - -
Bisa03g1785 807 Coils Coil 84 104 - -
Bisa03g1785 807 Hamap Elongation factor Tu [tuf]. 399 807 IPR004541 GO:0003746|GO:0005525|GO:0006414
Bisa03g1785 807 ProSiteProfiles SGF29 C-terminal domain profile. 155 335 IPR010750 -
Bisa03g1785 807 FunFam SAGA-associated factor 29 isoform X6 163 226 - -
Bisa03g1785 807 FunFam Elongation factor Tu 399 611 - -
Bisa03g1785 807 CDD EFTU_II 619 705 IPR033720 -
Bisa03g1785 807 PRINTS GTP-binding elongation factor signature 492 503 IPR000795 GO:0003924|GO:0005525
Bisa03g1785 807 PRINTS GTP-binding elongation factor signature 456 464 IPR000795 GO:0003924|GO:0005525
Bisa03g1785 807 PRINTS GTP-binding elongation factor signature 529 538 IPR000795 GO:0003924|GO:0005525
Bisa03g1785 807 PRINTS GTP-binding elongation factor signature 412 425 IPR000795 GO:0003924|GO:0005525
Bisa03g1785 807 PRINTS GTP-binding elongation factor signature 476 486 IPR000795 GO:0003924|GO:0005525
Bisa03g1785 807 FunFam Elongation factor Tu 614 742 - -
Bisa03g1785 807 Gene3D - 227 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1785 Bisa-ChrBisa03 24340873 24351215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1785 406 805 Eukaryotic Initiation Factors Gene Family AT5G60390 30.425 1.19e-43 162