Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1744 ATGCCCACTGGCTCTTGTGGATATGGATCTAAGTTCCATCATCCTGATCCAACAGATTGGACAGGAATTCATTCTCACAACTCAAACTCAAAGGGGAGATCTACTGAGGATTTGAACTATACTGCTGAAAACTATAATGGTGAATTGAATTCTCTTCAAGGGCTAAGGCTGTCAGACCTAACTGCAGCATCACTGTCTTCACATGTTGCATTAGAGCATCATGTTCTCTTCTCAGATCACTCTGCCAGGATGGATGCACTTCCTCAAGAAGATCATTTAAATTCAAAATGCAATAATTATCAGATAGATGACTCCTTGTGTCCACATGTCCATGTTGATGGAGAGGCTTACTTGAATGCTTTTGTGCACGTATGCGTGCCTGCTTCTGCGCCATCTACCTACATGTCTATTTCATGGGATGTACAGTCTTCCTTTGTTTCAGAAGAAAAAACTGATCGATTTCCATCAGCCCCAACATCGATTAACTTAATGAAAGTAGATATGTTGGCCGATCGCAGTACCCCTAATAAAAAAGATATACATCATGAAGATTTCCCTGGAAGACCAGATGAGATGGAATGTGCATACTTCATGAAAACTGGTAACTGTAAATATAGATCTGCTTGTAGGTATCACCATCCTAAGAGCAGAGCTTCATTGCCGAGTGACCTGAAAACAGTTGATCTCACTGTACATAGACAAATTTGCCGTCACTTTGAGCAACGTGGTAATTGTAAGTACGGGATTAACTGCCATTTTGACTGTCCAGAGAATCTTGGGTCATTAGCTTTTTCTGCAAGTTCTGTTTTACTGAGCAGCAATGAATTTTCATCTTTTGGAGATACCACAGATGGCTGGGTGTGA 864 0.4097 MPTGSCGYGSKFHHPDPTDWTGIHSHNSNSKGRSTEDLNYTAENYNGELNSLQGLRLSDLTAASLSSHVALEHHVLFSDHSARMDALPQEDHLNSKCNNYQIDDSLCPHVHVDGEAYLNAFVHVCVPASAPSTYMSISWDVQSSFVSEEKTDRFPSAPTSINLMKVDMLADRSTPNKKDIHHEDFPGRPDEMECAYFMKTGNCKYRSACRYHHPKSRASLPSDLKTVDLTVHRQICRHFEQRGNCKYGINCHFDCPENLGSLAFSASSVLLSSNEFSSFGDTTDGWV 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1744 287 MobiDBLite consensus disorder prediction 21 36 - -
Bisa03g1744 287 ProSiteProfiles Zinc finger C3H1-type profile. 230 258 IPR000571 GO:0046872
Bisa03g1744 287 MobiDBLite consensus disorder prediction 17 36 - -
Bisa03g1744 287 Gene3D - 187 261 - -
Bisa03g1744 287 ProSiteProfiles Zinc finger C3H1-type profile. 188 216 IPR000571 GO:0046872
Bisa03g1744 287 PANTHER PROTEIN PHOSPHATASE RELATED 1 258 - -
Bisa03g1744 287 SMART c3hfinal6 232 257 IPR000571 GO:0046872
Bisa03g1744 287 SMART c3hfinal6 188 215 IPR000571 GO:0046872
Bisa03g1744 287 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 234 253 IPR000571 GO:0046872
Bisa03g1744 287 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 215 IPR000571 GO:0046872
Bisa03g1744 287 SUPERFAMILY CCCH zinc finger 192 216 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1744 Bisa-ChrBisa03 23807970 23810089 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1744 161 285 C2H2 Transcription Factor Family AT5G18550 32.911 1.58e-16 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa03g1744 zf-CCCH 9.1e-06 CL0537