LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g1738	ATGGAGGGTATAAAACCTGATATGAAAAGTCATCCACCTGAAAATGATATGCAAAATGAAGGTCAAACATCTCCTGCAGCAGTGATTGATGTTGGGCAAGAGAATCAAAGTCCCAGGGCTTCCTCTATTGCAGTTGGTGACAGGGTCATTGATACTGAGCATGAGTGTACAAGCCTGAACGTTTGTCCTGTTGATCAAAATCAGATGGAAATTAATGATAATGGTTGTCAGAATTTAAACATTTCCTGTGATGACAAATTTGAGATTGATGCTGCTAATGGACAGCTGTCTCAGAGATCCAATGTTTCCTCAGTTGATGTCCCAAGTAACAGTAGTGCCACAAAAGATGAGGAGGAGCTGTATTTGGTACCAAAAATTGATGTGGAATTTGATTCAGAAGACCATGCTTACATGTGTTATAGCAAGTATGCTGTTCTGCAAGGATTCAGCATAAGAAAAGATTTTGTCAATAAAAGTAGGGTAAATGGTGCAATTGTATCTAGAAGATTCACTTGCTATAGACAGGGTTATCGGCCTAACAAGCATAATGCCAACCCAAGGAAATCCCAGCCAGAAACAAGGACTGGATGTCTGGCACATATGACTATTGCTCGTCAGCCTAATGGCAAGTTTCGTGTCACTCATTTTGAAACAGAGCATAACCATGAGTTGGTAACGCCCCGAACAACTCATATGTTACCATCACAGAAAAGATTGAGCTTTGCCCAAGCAGTTGAATCTAACGCAGCCAATGATTCTGCATTGGATGGGGTACCGAAACTTGGAATGGGATTTGAGTCAGAAGATCATGCATATGAATTTTATAATACATATGCTGGAGGTGTAGGTTTCAGTGTTCGAAAAGATTATGTAAACAGGAGTAAAATTGATGGTGCTGTAGCATCTAGGAGGTTTACATGCTTTAGAGAAGGTTTTCGGCAGAAAGACAAACGTGGTATGAATGTAAAGAGGTCTCGAAAGGAAACTAGAATTGGATGTTTAGCACAACTAGTAATTTCTCGTCAACCTGATGGTAGATATCGTGTAACTCACTTTGAAGAAAAGCATAACCATGAGCTTGTTTCTGCATGTAGAGTTCACATGTTACGATCACAGAAGAGAATAGCCACAACTCAAGCCATTGGAAGCATTGTGGTAGATGGTTCCAGGATTCCTATGTCAGACTCTGAATCAAATTGCACAGCTGTTGAAGGTTTTGATGATCGGGGTTATGATCCAGTAGATTATGAAAATAAGTTGCCTTTGAAGCGTACGAGAGAAATGAAAGAGGGAGAAATTGAAAAGATGAAGCAACACTTTCAAAGCAAGCGATCGAAGAATCCTTCTTTCTTTTATGCTTTCCAGCTTGATTCCGATGATCAGATAACTAATATTTTTTGGGCTGATGCAAAGATGATAGTAGATTACGGTGATTTTGGTGATGTTGTTTGCTTTGATTGTAGTTACAGATTTTATACAGACTCCCGCCCCTTTACTCCATTTCTTGGTGTCAATAATCACAGGCAAATGGTTATATTTGGGGCCGCACTTCTCTATGATGAAACCGTTGAATCTTTCAAGTGGCTATTTCAAGTTTTCTTGAAGGCAATGTCCAAAAGAAAGCCAAAGACAATTCTTACAGATCAAGATGATATAATAGTTGAAGCAATCTCTTCTGTATTGCATGAAACAAACCATCGAATTTGTGTTTGGCATGTGTACCAAAATTCTCTGAAGCAACTCAGTTACATGTTTGTGGGATCTGAATCTTTTGTCAATGACTTGATCAGCTGCTTTTTTGATCATGAGGAGGAGGAAGATTTTGTTAATGCATGGAATGCCTTTCTGGACAGGTATAATCTTAGGGAAAATGAATGGTTGCGTCGTATATATGAATGCAGGGACAAATGGGCCATAGCATATGGAAAGCAAGTTTTCTGTGCTGACATAGCAAGTGTGCTGCGGAGGGAAAATCTTACTGGCAGCTTTAAAAAGTACCTAAAGAATGATTCAGATGTGCTATCATTTCTCAAGCACTTAGGGAAGGTGGTGAAAGATTGGCACTATAAGGAATTAGAAGCCAATTTTGACATGAGCCAGCACATGCCAGCGCTGATGGGAGATGTGATCATGTTAAAGCATGCAAGGGATCCATACACTCCAAAGACATTTGAGTTATTTCAGAAAGAATACGAAACTTGTTTAAATCTTGTGATAAAGCTTCGCAGTGAGAGTGAACCGTTGTACATATATAAAGTTAACTTGTACGAAGCCGTTCGAGAGTATACAGTTACCTTTAATTCATCTAATGAGACAGTCGCTTGCAGCTGTATGAAATTCGAGTCCATGGGAATCTTATGCAGTCATGCATTGAAAGTTCTTGATTACAGGAATATAAGGATACTTCCGTCATTGTACATCTTAAAGAGATGGACAAAAGATGCGAGAGAGTTGATATTTGGAGGCAAACGAGTACATTTTCTTCCAAAAAAAGGGATAGGCATATGCGTTAAGGTATAG	2520	0.3925	MEGIKPDMKSHPPENDMQNEGQTSPAAVIDVGQENQSPRASSIAVGDRVIDTEHECTSLNVCPVDQNQMEINDNGCQNLNISCDDKFEIDAANGQLSQRSNVSSVDVPSNSSATKDEEELYLVPKIDVEFDSEDHAYMCYSKYAVLQGFSIRKDFVNKSRVNGAIVSRRFTCYRQGYRPNKHNANPRKSQPETRTGCLAHMTIARQPNGKFRVTHFETEHNHELVTPRTTHMLPSQKRLSFAQAVESNAANDSALDGVPKLGMGFESEDHAYEFYNTYAGGVGFSVRKDYVNRSKIDGAVASRRFTCFREGFRQKDKRGMNVKRSRKETRIGCLAQLVISRQPDGRYRVTHFEEKHNHELVSACRVHMLRSQKRIATTQAIGSIVVDGSRIPMSDSESNCTAVEGFDDRGYDPVDYENKLPLKRTREMKEGEIEKMKQHFQSKRSKNPSFFYAFQLDSDDQITNIFWADAKMIVDYGDFGDVVCFDCSYRFYTDSRPFTPFLGVNNHRQMVIFGAALLYDETVESFKWLFQVFLKAMSKRKPKTILTDQDDIIVEAISSVLHETNHRICVWHVYQNSLKQLSYMFVGSESFVNDLISCFFDHEEEEDFVNAWNAFLDRYNLRENEWLRRIYECRDKWAIAYGKQVFCADIASVLRRENLTGSFKKYLKNDSDVLSFLKHLGKVVKDWHYKELEANFDMSQHMPALMGDVIMLKHARDPYTPKTFELFQKEYETCLNLVIKLRSESEPLYIYKVNLYEAVREYTVTFNSSNETVACSCMKFESMGILCSHALKVLDYRNIRILPSLYILKRWTKDARELIFGGKRVHFLPKKGIGICVKV	839

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g1738	839	Pfam	MULE transposase domain	482	576	IPR018289	-
	Bisa03g1738	839	Pfam	SWIM zinc finger	759	797	IPR007527	GO:0008270
	Bisa03g1738	839	ProSiteProfiles	Zinc finger SWIM-type profile.	762	798	IPR007527	GO:0008270
	Bisa03g1738	839	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	114	243	IPR031052	GO:0006355
	Bisa03g1738	839	MobiDBLite	consensus disorder prediction	1	25	-	-
	Bisa03g1738	839	Pfam	FAR1 DNA-binding domain	140	225	IPR004330	-
	Bisa03g1738	839	Pfam	FAR1 DNA-binding domain	273	361	IPR004330	-
	Bisa03g1738	839	SMART	26again6	773	800	IPR006564	GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g1738	Bisa-ChrBisa03	23717802	23720321	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Bisa03g1738		MULE	7.9e-23	CL0219