LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g1735	ATGGGAAGGCAGCCTTGTTGCGATAAGGTTGGTTTGAAGAGAGGTCCTTGGACTATCGAGGAAGATCACAAGCTCATCAACTTCATCCTCAACAATGGCATCCATTGTTGGCGTATGGTCCCCAAGCTTGCAGGTCTGCTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGCTTCACAGAGGTGGAAGAGGATGAAATTATTCAGCTACATTTACGACTTGGTAACAGGTGGTCTAAGATTGCAGCACATTTTCCTGGGAGGACAGACAACGAGATCAAGAACCATTGGAACACAAGAATCAAGAAGAGGCTGAAGCAGCTTGGTGTGGACCCTGTGACCCACATGCCAATTCAGCTGAAGGAACTCACCCATGATAACAAACGGACACACCGATTGCAGCCAAGTAGTTCTTCTTCCAAAGGGTCTGAACAAAATGTGGAGATAATGAAGTCCTTAGACAGCACAGAAGAAGAAAAAAGGGAAGACAACAAGGTGGCTTGGGATGGTACTACCTCTGGTATTATAAACAACAATGAAATACAATGCTCAGAGTTAGACTTTGGATCATGGACGAGACAAGAAACAAACACCAGCACCAGTTCGTTCAGTAGTTCTTCTTTCTCTCAGCTGGATGATTCCAGCCACCTTTCCATGGGAGAATCTTCTTTTCTGCAACAAAATTCCTCAATGCAATGGGTTGACAGTATCAATATGGATTCCATTCTGGCATGGGATGGCTTCAGTCCTCTGGAGCAGGATCTTTTCTTCTTGGAAAACACACAATCAACATGA	828	0.4469	MGRQPCCDKVGLKRGPWTIEEDHKLINFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEVEEDEIIQLHLRLGNRWSKIAAHFPGRTDNEIKNHWNTRIKKRLKQLGVDPVTHMPIQLKELTHDNKRTHRLQPSSSSSKGSEQNVEIMKSLDSTEEEKREDNKVAWDGTTSGIINNNEIQCSELDFGSWTRQETNTSTSSFSSSSFSQLDDSSHLSMGESSFLQQNSSMQWVDSINMDSILAWDGFSPLEQDLFFLENTQST	275

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g1735	275	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	228	-	-
	Bisa03g1735	275	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Bisa03g1735	275	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Bisa03g1735	275	MobiDBLite	consensus disorder prediction	162	178	-	-
	Bisa03g1735	275	CDD	SANT	16	61	IPR001005	-
	Bisa03g1735	275	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Bisa03g1735	275	Gene3D	-	11	67	-	-
	Bisa03g1735	275	Pfam	Myb-like DNA-binding domain	67	110	IPR001005	-
	Bisa03g1735	275	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Bisa03g1735	275	MobiDBLite	consensus disorder prediction	135	182	-	-
	Bisa03g1735	275	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Bisa03g1735	275	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Bisa03g1735	275	CDD	SANT	70	110	IPR001005	-
	Bisa03g1735	275	Gene3D	-	69	176	-	-
	Bisa03g1735	275	SMART	sant	13	63	IPR001005	-
	Bisa03g1735	275	SMART	sant	66	114	IPR001005	-
	Bisa03g1735	275	FunFam	MYB transcription factor	11	67	-	-
	Bisa03g1735	275	FunFam	MYB transcription factor	68	129	-	-
	Bisa03g1735	275	MobiDBLite	consensus disorder prediction	144	161	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g1735	Bisa-ChrBisa03	23682589	23683577	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g1735	1	181	MYB Transcription Factor Family	AT5G16600	60.109	1.80e-75	231

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa03g1735		Myb_DNA-binding	1.9e-11	CL0123