Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1667 ATGGTAGTGAGCGGAGGGAAGCCATTGAAGCGGATGAAGAGAAGAGTCACAGCTGATTTCTACGATTTCCTGACTTTCCCGTCTCCGTCGCTCGCCGGAGTGGAGGATTTCTCCGGTGGACCCTTCCGGAGCAACGTGCGATCTTTCCTATCAAAGCACGCGCTGCTGCCACCACCGTCGGCTCTGTTCCCTCATCTGTTGACATGGCAGATCCTGTTCAGAGTAGGTGACTTGACCGACGGCCCGGAATCGAGCCCGGCGGTGGTGTGCCTCGACGTGGTTGAAGAGGACGTCACCAGATCCAGATCCGTGTACTGCGATCAGTGCCGCGTTGTTGGTTGGAGCGGCCATCCAGTATGCGGAAAACGTTACCATTTTATAATGAAGGCTGATGGTAGTTCCATTGGTGGTTATCACAAGCCATGTATGTGCTGTGGAGACATCTTGCATTTGTCAGAATCCAAGTGCAAGTCATGCAACCATGTGACAACCACAGATGATGTTGAAGACTGGGTCTATCACCAGTTAGAAAACACGACTCATCTTTTACATGGTGTAGTCCATGCCAATGGTTATGCGCACCTTCTTCGGGTTAATGGCAGAGAAGGTGGCTCAAAATTTCTTTCTGGGTGCCATATCATGGACTTCTGGGATCGTCTCTGCAAGACACTTGGAATTAGAGAAGTTAGCGTGATGGATGTGTCCAAGAAATATGGATTGGAGTACCGCCTGCTCCATGCTATCACAAGAGGACATCCTTGGTATGGCGACTGGGGTTATCAGTTTGGCTCTGGTAGCTATGGTCTTACACATGAAGCATACAAGTCTGCTGTTGAATTCCTCTCCAATCTGCCCTTATCCATCTTTCTCTCCCAGGAGCAGAAACGTGACTCACGTGTACAAGACATGATCTCATATTACCAGTCTTTGTCAAAGAATGAGCTTGTAAATATAAGGGACTTCTTTTGTTTTATAATGGGTTTGATTCATGATGCTCGCAAGACTGCATCAAGGGTTGATGATGTCACCTGCAAGAAGCAACGTGTAAATGCTGCAGGTCTGTCATCTTTGTGGACAAAGAGTGACATTGAACGTGTGGAGGAAGCCATGCTCAGAGTGCTTCGTGCTGTGTCTGGCTCCAATTGGGTGAGCTGGCGTGCTCTAAGGGGTGCTGTCTGCAAGGTGGCCTCTCCAGAGCTGCTTGATTACTGCCTTGGAGAATTGGGGGGAAAAGTGGTCCTTGGTGCAGTGGTGAATGCCCGATGCAATCCTGTTACTGGTGCATTTGAGTACAGACTAGAGACAAGGAATAACTCTTGCTTTGGAATTGCAAACAATGATTCTTCAGGTCTAACGTATCCATCTGAAGTGAATCTTCTGCACGACTTGAGATATCTCTACAATTCTCTGCTTCATCCTCAGACGATACTGAGCTATGACCCAGAGGGGACAAGGTCACTTGCTATGAGCTCTGCTCAGAAACTTCTTGATTGCAAGCAGTTTGTTAAGGACTATAAACCTGAGACGCCGCCAATGACAAACTTGTCTATGATACGCCTCTCATGTCAATTAGAACTTGTTGATGAATCTGAAGATTCTGCCGCACACCCTCCCCCGGAATTGATTGTCCTCCCCGTAAATGCCAGTGTGTCTGACCTCATGATTGAAGCAGCAAATGCTTTTCAAGACGTATATGTCATGTTTAGAAGACTTCAAGTTGAGGAGCTTCTTGGCTATAGCGGTGTCGATGATTCCACCCAGGTCAAGCAGTTGTTAGGATCGACGACTGAAGCAGTTTGGGTGCAAGGAAGATGCATCAGCAAGAACGGGTTGAGCAAGTTCCAAATGGAACGGGGAATTGAGAGATGGACTGTGGATTGCAGCTGCGGGGCCAAAGATGACGATGGGGAGAGAATGTTGGCTTGTGATGTATGTGGAGTGTGGAGACACACAAGGTGTTCTGATATTCACGACGTAGATCCTGTACCTGCGAGGTTTGTTTGCCCAAGATGCCAAAACTGTGACTCCAAACTCAAATCCAGTGGGCACTGTGAAGATGAGTTTGTCTCTAGCATCAATTCTAACAGTAGTTGCTTTGGAAACGGCTTCCCAGTGCCTTCTGATGTTCGTTGA 2133 0.4796 MVVSGGKPLKRMKRRVTADFYDFLTFPSPSLAGVEDFSGGPFRSNVRSFLSKHALLPPPSALFPHLLTWQILFRVGDLTDGPESSPAVVCLDVVEEDVTRSRSVYCDQCRVVGWSGHPVCGKRYHFIMKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYAHLLRVNGREGGSKFLSGCHIMDFWDRLCKTLGIREVSVMDVSKKYGLEYRLLHAITRGHPWYGDWGYQFGSGSYGLTHEAYKSAVEFLSNLPLSIFLSQEQKRDSRVQDMISYYQSLSKNELVNIRDFFCFIMGLIHDARKTASRVDDVTCKKQRVNAAGLSSLWTKSDIERVEEAMLRVLRAVSGSNWVSWRALRGAVCKVASPELLDYCLGELGGKVVLGAVVNARCNPVTGAFEYRLETRNNSCFGIANNDSSGLTYPSEVNLLHDLRYLYNSLLHPQTILSYDPEGTRSLAMSSAQKLLDCKQFVKDYKPETPPMTNLSMIRLSCQLELVDESEDSAAHPPPELIVLPVNASVSDLMIEAANAFQDVYVMFRRLQVEELLGYSGVDDSTQVKQLLGSTTEAVWVQGRCISKNGLSKFQMERGIERWTVDCSCGAKDDDGERMLACDVCGVWRHTRCSDIHDVDPVPARFVCPRCQNCDSKLKSSGHCEDEFVSSINSNSSCFGNGFPVPSDVR 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1667 710 CDD PHD_MMD1_like 626 671 - -
Bisa03g1667 710 Pfam PHD-finger 627 674 IPR019787 -
Bisa03g1667 710 SMART PHD_3 626 672 IPR001965 -
Bisa03g1667 710 SUPERFAMILY FYVE/PHD zinc finger 616 673 IPR011011 -
Bisa03g1667 710 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 683 - -
Bisa03g1667 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 677 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1667 Bisa-ChrBisa03 22739918 22745332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1667 85 678 PHD Transcription Factor Family AT5G22260 29.180 4.72e-86 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa03g1667 PHD 2.1e-07 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g1667 03 22739918 22745332 Bisa03g1667 03 22739918 22745332 ECH