LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g1609	ATGGTACTTTTATGTACGGATAGAGATGGATACCATTGCTCTAGACAGAATTATTTTATTGGTAATCTTATATTTACGATAAGTGTTCCTTGCAATGATGCCATCCCACAATCTCATTCTCAGATCTCAGGAGTGACGTCTCTATCGGACAGGGTTTCAGCGGCGTGTACCCAAAACTTTCTCTACTGGTCAACCCTTACGCCAAGAAAACAGTTAACGTGTGTTGACTGTGCACTTGAAATCAGAAAAGTCACACATTGGTCTGTTGCGTTACGTAACTCAAGAGCAAGCAAGAAAACTCCTTCACGCACGGCCATGGATGTCTCTTCATCACACATTCTCTCCACAGCGTTGTTTCTTCTCTGTGCAGTGTCTCAATCAGTGCACTGCCAACAAGCGTACCTGAACGACACCGTTTACGACTGCTCCAGCAACCCCTCTATCCCCAAAGGCTACCTCTGCAATGGCCTCCAAAAGTCTTGCAGGTCCTTCCTCTCTCTAAGATCCAAACCACCCTATGACACCCCTCTCAGCATCGCCTACCTCCTTGGCTCCGAAGCGTCCATTATATCCTCCATCAACAACGTCTCCGACAACGAAAAGATTCCTACCAACAAATCCGTCGTCGTTCCAATATCCTGTTCCTGTTCTGGAAATATCTACCAGCATAACACACCCTACACAGTCAGATTAGCCGACACATACTATCAGTTAACAAAACGGGATTACCAAGGCCTCACCACGTGTCAATCTCTTATGGGTCAGAACTATTATGCTGCTATTGACATTCCTGTGGCTGCTCAGCTCAGTGTTCCTCTGTTATGTGCCTGTCCCACGGCGGAGCAGGCCGCCGTTGGGATTACCTCCTTGCTGGCTTACACCGCCGCAGACGGCGGCGAGAGGGTCCACTCTGTTGCAAAGGCTTTTGGTGTGGATGAAAGTGCCTTGGCAAACGCTAATAATGTGCCACTGAACCCCATCATCGCCGCTTTCACCCCCATATTGGTGCCCCTCAAAGGCAACACTTGCAAGCAAGACCCGAGTAGTTTCTTTTGCACATGTTCGTCCTCCTCCGCCGCCGCTGATGCAAGTTCCGTTGACCTCTACTGCAAGGATTCTAACGATCAGAAGTTTCCGGTCAAATTGGTTGCTTCTTTAGGTGCTGGCATTGGCGCTGGGCTTCTGTGTTTATTTGTTCTGGGTTACAAGCTGTACCAATGCCTTAAGCAAAAGCGACGCAACATTCTGAAGCAAAAACTGTTTAAGCAAAACGGTGGCTTCTTGCTTCAAGAAAAAATCTCGTCTTACGGCAACGGAGAAAAATCGAAGCTTTTTACGGCAGAGGAATTGCGAAGAGCAACGGATAACTACAACCAGAGCAGGTTCCTCGGGCAGGGGGGATACGGCGTCGTTTACAAGGGAATGCTACCAGACGGCACCATCGTCGCGGTTAAGAAATCAAAACAAATTGATCGAAGCCAGATCGAAACCTTCATCAACGAAGTGGTCATTTTGTCCCAAATCAACCATAGAAACATTGTCAAGCTCCTAGGTTGTTGTTTGGAGACAGAAACCCCATTGCTGGTGTATGAATTTATTCCCAACGGAACTCTTTCGCATTACATTCATAGGCAACACCATGAATTGTCGCTTTCGTGGGATTATCGGCTTCAGATTGCGTGTGAGGTCGCCGGAGCAGTGGCGTATATGCATTTCGCGGCGTCGATGCCTATATTCCACAGAGACATTAAACCCTCCAATATACTTCTCGATGACAAGTTCAGAGCCAAAGTTTCTGACTTTGGAACTTCGAGATCGGTCCCACATGATAAAACTCACTTGACCACTGCAGTACAAGGAACATTTGGTTACATAGATCCTGAATATTTTCAGTCTAGCCAATTTACAGATAAGAGTGATGTGTATAGTTTTGGGGTTGTGCTCGTGGAACTCTTTACTGGGAAAAAACCCATTTCGTTTTTGGAGGAAGATGAAGGTCAGAATCTTATTGCAGAGTTCATTTCATCGATGGAGGAGGATAAGCTGTATAAGATTTTGGACGATAGAGTTGTTAATGAAGCAAGCATAGATGATGTTGTTGTGGTCGCGAATCTTGCATTGAGATGTCTGAGACTGAACGGGAAAAAGAGACCGACAATGAAAGAGGTTTATGTGGAGCTAGAAGCACTGAGGAAGGCACAAAGGTCCATACAGATTAATCAAGATTCCGAGTTACCAATTGATTTAACGTCAGTTAGGCATAGCAGTAGTCAAGCAGTCCAAGACTCCACAGAGGAAAGCATTTTGCTTAGCTTTCAGGAGTCCACATGGACCACATCCATCTCTGACAACAGATTTGTTACAGATTAG	2370	0.4603	MVLLCTDRDGYHCSRQNYFIGNLIFTISVPCNDAIPQSHSQISGVTSLSDRVSAACTQNFLYWSTLTPRKQLTCVDCALEIRKVTHWSVALRNSRASKKTPSRTAMDVSSSHILSTALFLLCAVSQSVHCQQAYLNDTVYDCSSNPSIPKGYLCNGLQKSCRSFLSLRSKPPYDTPLSIAYLLGSEASIISSINNVSDNEKIPTNKSVVVPISCSCSGNIYQHNTPYTVRLADTYYQLTKRDYQGLTTCQSLMGQNYYAAIDIPVAAQLSVPLLCACPTAEQAAVGITSLLAYTAADGGERVHSVAKAFGVDESALANANNVPLNPIIAAFTPILVPLKGNTCKQDPSSFFCTCSSSSAAADASSVDLYCKDSNDQKFPVKLVASLGAGIGAGLLCLFVLGYKLYQCLKQKRRNILKQKLFKQNGGFLLQEKISSYGNGEKSKLFTAEELRRATDNYNQSRFLGQGGYGVVYKGMLPDGTIVAVKKSKQIDRSQIETFINEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSHYIHRQHHELSLSWDYRLQIACEVAGAVAYMHFAASMPIFHRDIKPSNILLDDKFRAKVSDFGTSRSVPHDKTHLTTAVQGTFGYIDPEYFQSSQFTDKSDVYSFGVVLVELFTGKKPISFLEEDEGQNLIAEFISSMEEDKLYKILDDRVVNEASIDDVVVVANLALRCLRLNGKKRPTMKEVYVELEALRKAQRSIQINQDSELPIDLTSVRHSSSQAVQDSTEESILLSFQESTWTTSISDNRFVTD	789

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g1609	789	FunFam	Wall-associated receptor kinase 2	428	532	-	-
	Bisa03g1609	789	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	578	590	IPR008271	GO:0004672\|GO:0006468
	Bisa03g1609	789	Gene3D	Transferase(Phosphotransferase) domain 1	533	754	-	-
	Bisa03g1609	789	ProSiteProfiles	Protein kinase domain profile.	457	730	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g1609	789	ProSitePatterns	Protein kinases ATP-binding region signature.	463	486	IPR017441	GO:0005524
	Bisa03g1609	789	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	80	736	IPR045274	GO:0007166
	Bisa03g1609	789	CDD	STKc_IRAK	463	730	-	-
	Bisa03g1609	789	SMART	serkin_6	457	730	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g1609	789	Gene3D	Phosphorylase Kinase; domain 1	427	532	-	-
	Bisa03g1609	789	SUPERFAMILY	Protein kinase-like (PK-like)	440	727	IPR011009	-
	Bisa03g1609	789	FunFam	Wall-associated receptor kinase 2	533	747	-	-
	Bisa03g1609	789	Pfam	Protein kinase domain	457	723	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g1609	Bisa-ChrBisa03	21723487	21727285	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g1609	387	734	Receptor kinase-like Gene Family	AT1G16130	58.000	8.53e-141	431

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Bisa03g1609		Pkinase	4e-50	CL0016