Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1590 ATGGATTTCGATGCCGCAATTCCTATGTCCCGAGCGGCCCTCACCGACTCATCCTCCCTCTCCCAAGATGCAATGTGGCAAATGAAATTGAGATCAAGTGAAACAATGGAATCTGGAGCCTATCCTGAGCGTCCGGGAGAATTGGATTGTTCTTATTACATCAGAACAGGCCTTTGTAGATTTGGGGCGACATGTCGATTTAATCATCCACCTAACAGGAAGCTGGCTATTGCCACTGCAAGGATGAAAGGCGAGTTCCCAGAAAGAATTGGACAACCAGAATGTCAGTACTATCTGAAGACAGGAACTTGCAAGTTTGGAGCCACATGCAAGTTTCATCATCCAAGAGAAAAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATAGTGTAGGCTATCCACTTCGCCCGAATGAACTGGAATGTGCCTATTATTTGAGAACTGGACAATGCAAATTTGGCGGCACTTGCAAATTCCACCATCCTCAGCCAAATAATATGATGGTTTCATTACGGGGTTCTCCAGTTTACCCTACTATTCATTCTCCAACTACGCCAGGTCAGCAGTCATCATTTGCAGGGGGAATTACGAACTGGTCCAGAGCTTCTTATATTCCTAGTCCACGCTGGCAAGGCCCTTCAAGCTATGCACCATTACTTCTACCTCAGGGAGTTGTTTCAGTTCCTGGGTGGAGTGCATATAGTGGTCAGATGGGATCAATCTCTACTTCGGAAAGTCCTCAGCAAACAATAGGAAATGGTCAAATCTATGGAACTTCCCGACAGGGTGAACCAGGAAATGCAGGATCTCAATTTCGCTCTGGCTCTGTTCCTCTGGGGTTTTATGCACTGCAGAGGGAGAACATATTTCCCGAGAGACCTGGTCAACCTGAATGCCAATTCTACATGAAGACTGGAGATTGTAAGTTTGGTGCTGTCTGCCGGTTTCATCATCCACGTGAGAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATTGGCCTTCCTTTACGTCCAGGAGAGCCTTTGTGTGTTTTCTATTCGCGTTATGGCATATGCAAATTTGGTCCAAGTTGCAAGTTTGATCACCCAATGGGAATCTTCGCATACAATATACCTGCATCACCTACAGCCGATACCCCAGTCCGTCATTTATTGGGGTCTTCATCAGGAACCACTGCATTAAATTTATCGTCAGAAGGACTTGTTGAGTCAGGCTCGGTGAAGCCCAGGCGGCTTTCATTGTCAGAGACTAGACAGCTTTCTTCTGGTGAAGATAGCATTGATGATGAGGGATGA 1299 0.465 MDFDAAIPMSRAALTDSSSLSQDAMWQMKLRSSETMESGAYPERPGELDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPREKAGIAGRVALNSVGYPLRPNELECAYYLRTGQCKFGGTCKFHHPQPNNMMVSLRGSPVYPTIHSPTTPGQQSSFAGGITNWSRASYIPSPRWQGPSSYAPLLLPQGVVSVPGWSAYSGQMGSISTSESPQQTIGNGQIYGTSRQGEPGNAGSQFRSGSVPLGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCVLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNIPASPTADTPVRHLLGSSSGTTALNLSSEGLVESGSVKPRRLSLSETRQLSSGEDSIDDEG 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1590 432 ProSiteProfiles Zinc finger C3H1-type profile. 44 72 IPR000571 GO:0046872
Bisa03g1590 432 FunFam Zinc finger nuclease 2 43 120 - -
Bisa03g1590 432 PANTHER PROTEIN PHOSPHATASE RELATED 23 392 - -
Bisa03g1590 432 ProSiteProfiles Zinc finger C3H1-type profile. 135 163 IPR000571 GO:0046872
Bisa03g1590 432 FunFam CCCH type zinc finger protein 290 375 - -
Bisa03g1590 432 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Bisa03g1590 432 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Bisa03g1590 432 MobiDBLite consensus disorder prediction 401 432 - -
Bisa03g1590 432 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 162 IPR000571 GO:0046872
Bisa03g1590 432 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 340 365 IPR000571 GO:0046872
Bisa03g1590 432 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 294 319 IPR000571 GO:0046872
Bisa03g1590 432 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 71 IPR000571 GO:0046872
Bisa03g1590 432 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872
Bisa03g1590 432 SUPERFAMILY CCCH zinc finger 138 163 IPR036855 GO:0046872
Bisa03g1590 432 SUPERFAMILY CCCH zinc finger 49 72 IPR036855 GO:0046872
Bisa03g1590 432 Gene3D - 46 122 - -
Bisa03g1590 432 Gene3D - 290 367 - -
Bisa03g1590 432 Gene3D - 123 170 - -
Bisa03g1590 432 ProSiteProfiles Zinc finger C3H1-type profile. 292 320 IPR000571 GO:0046872
Bisa03g1590 432 SUPERFAMILY CCCH zinc finger 296 322 IPR036855 GO:0046872
Bisa03g1590 432 SUPERFAMILY CCCH zinc finger 341 365 IPR036855 GO:0046872
Bisa03g1590 432 ProSiteProfiles Zinc finger C3H1-type profile. 338 366 IPR000571 GO:0046872
Bisa03g1590 432 SMART c3hfinal6 338 365 IPR000571 GO:0046872
Bisa03g1590 432 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Bisa03g1590 432 SMART c3hfinal6 135 162 IPR000571 GO:0046872
Bisa03g1590 432 SMART c3hfinal6 292 319 IPR000571 GO:0046872
Bisa03g1590 432 SMART c3hfinal6 44 71 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1590 Bisa-ChrBisa03 21496640 21501724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1590 25 431 C2H2 Transcription Factor Family AT3G02830 62.470 0.0 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa03g1590 zf-CCCH 5.2e-09 CL0537