LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g1540	ATGTGCGAAACCCTGAAGCAGCAGTACCAGTTGTGCGACGAGATCGGTCGTGGACGTTTCGGCACCATCTTCCGCTGCATTCATCTGATTTCCAACGAATTCTACGCCTGCAAGGTCATCGACAAGCGCCTTCTCCTTGATTCCACCGACCGCGAGTGCCTCGAGAACGAGCCCAAATTCATGACTCTGTTATCGCCACACCCTAATATTCTTCAGATCTTCGATGTCTTCGAAAGCGACGATTGCCTCTCCATTGTGGTGGAGCTCTGCCAGCCCATTACCCTCTTCGACCGCATCGTTAATCGCCCCTCGCCGGAGCCGGAAGCCGCTTCCTTCATGAAGCAGCTTCTTGAAGCCCTCGCGCATTGCCACCGACTGGGCGTGGCTCACAGAGACATTAAGCCCGACAATCTGTTGTTTGATTCGAGGGATAATCTTAAGATTGCGGACTTCGGGTCGGCTGAGTTGTTCGGCGACGGGAGAAGCATGACTGGGGTGGTGGGGACGCCGTACTATGTGGCGCCGGAGGTTTTGATGGGAAGAGAGTACAACGAGAAAGTGGATGTATGGAGTGGCGGTGTGATTTTGTACATAATGCTGGCTGGGATTCCGCCCTTCTATGGAGAATCAGCGGCTGAGATATTTGAGGCTGTGTTGAGGGCCAATCTGAGGTTTCCCTCTAGGGTTTTCAGGTCTGTGTCTCCTGCTGCTAAGGATCTACTCAGGAAGATGATCTGTAAAGATGCCTCAAGGCGATTATCCGCAGAGCAAGCCTTGAGGCATCCATGGATCCTGAGTGGAGGAGAGACCACTGATCTGACTTGA	825	0.5309	MCETLKQQYQLCDEIGRGRFGTIFRCIHLISNEFYACKVIDKRLLLDSTDRECLENEPKFMTLLSPHPNILQIFDVFESDDCLSIVVELCQPITLFDRIVNRPSPEPEAASFMKQLLEALAHCHRLGVAHRDIKPDNLLFDSRDNLKIADFGSAELFGDGRSMTGVVGTPYYVAPEVLMGREYNEKVDVWSGGVILYIMLAGIPPFYGESAAEIFEAVLRANLRFPSRVFRSVSPAAKDLLRKMICKDASRRLSAEQALRHPWILSGGETTDLT	274

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g1540	274	CDD	STKc_CAMK	8	263	-	-
	Bisa03g1540	274	SMART	serkin_6	9	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g1540	274	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	128	140	IPR008271	GO:0004672\|GO:0006468
	Bisa03g1540	274	SUPERFAMILY	Protein kinase-like (PK-like)	4	266	IPR011009	-
	Bisa03g1540	274	Pfam	Protein kinase domain	9	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g1540	274	ProSiteProfiles	Protein kinase domain profile.	9	264	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g1540	274	PANTHER	SERINE/THREONINE-PROTEIN KINASE	5	266	-	-
	Bisa03g1540	274	ProSitePatterns	Protein kinases ATP-binding region signature.	15	38	IPR017441	GO:0005524
	Bisa03g1540	274	FunFam	Phosphoenolpyruvate carboxylase kinase 1	1	91	-	-
	Bisa03g1540	274	FunFam	Phosphoenolpyruvate carboxylase kinase 2	1	274	-	-
	Bisa03g1540	274	Gene3D	Transferase(Phosphotransferase) domain 1	94	272	-	-
	Bisa03g1540	274	Gene3D	Phosphorylase Kinase; domain 1	1	91	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g1540	Bisa-ChrBisa03	20810072	20811047	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g1540	3	272	EF-hand Containing Proteins	AT1G50700	41.241	1.75e-75	236

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Bisa03g1540		Pkinase	7.5e-71	CL0016