Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1534 ATGGCCTTATCTGCTTCCACCGTGAATTGGGATTTCAGTCATCTGGATCAACAACATATTAATGCTTTCCAGCTATTTTTGAAGATCCTGGAACAAGCATTACCTTCTATAGAGTTTATCTCAGCTGTAATATGCAGCAGAAGTTCAGAGAACCAAAAAATTTTGCAGTTGTCACTTCATAACCACTCCTCACATCTCAAACTAATGAGAATACGTGTTCAAGAAGATAATGATGAGTTTCCATCAGTTCCACCAGGCTTTGAGTCATATACATCTTTCTCATTAAATAGGATGGAAGACAATGAGAAACAGAATGATAAAAACATGACCAGTTGTTCAGCCTCTACAAGTGCTTCTGAATCACGGTTGATTCAGGCTGAAACTGAGGTTCAAATTAGTGATACTGCAAAGATTCATAGGTCCCTTCGGCCAAGACGACAAATTAACCATGGATGGTATGACAACAGCTCTGGGGAAGACTCTGATTCTGAGCGGCTTGATCAAAATTTTTCCTCAAGATCTTGTCTTCCTAGGGGTGTCATCCGTGGATGTCCAGATTGCAGCAATTGCCAAAAGGTTGTTGCTGCATGGAGACCAGAAGATGCTTGCAGGCCCGACCTTGAGGATGCTCCTGTCTTTTACCCAACAGAAGAGGAGTTCCAAGATACTTTGAAGTATATAGCAAGCATTTGTAGCAGAGCAGAACCATATGGAATCTGTCGCATTGTTCCCCCTTCTTCTTGGAAACCCCCCTGTCCTCTTAAGGAAAAAACTATATGGGGGGGTTCTAAATTTTCTACTCGTGTCCAGAGGGTTGATAAACTTCAGAATCGTGGTTCGAAGAGAAAGATGTCAAGGATTCATAATAATACTAAAAGGAAAAGGAGAAGATGCACAAGAATGGGGTTGGATAATGGAACAATTAGATGGCCTAATGCAGGATTTTGTGAGATTGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAATATTTCAGCAATATGCAGATGATTTTAAGGCCAAATACTTCAGAACAAATGAGAATATATCGAATTTGGGAGGTAACACAACAGTGTTAGAAGGATGGGAGCCTTCTGTGGAGAACATTGAAGGTGAATATTGGCGGATAGTAGAGAGACCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGACCTGGAAACTGGGGTTTTTGGGAGTGGTTTTCCTAGAAAGCTCAGTGAATCTGGCTCCAATTTACCTGAAGAGTACATAAAATCTGGCTGGAATTTAAATAACTTTGCTAGACTTCCTGGATCTTTGCTCTCTCATGAAAGCGGTGATATATCTGGTGTACTAGTGCCATGGTTGTATATAGGAATGTGCTTTTCTTCCTTTTGTTGGCATGTTGAGGATCACCATTTATATTCATTGAATTACATGCATTGGGGTGCTCCAAAAATTTGGTATGGTGTCCCTGGAAAAGATGCTTGCAAATTGGAAGAGGCCATGAGGAAGCATTTACCTGACCTTTTTAAAGAACAACCTGACTTGCTTCATAAGCTGGTCACACAATTTTCTCCTTCTGTCCTGAAGTCTGAAGGAGTATCTGTCTATAGGTGTGTCCAGAACCCTGGAGAGTTTGTTCTGACGTTCCCTCGAGCATATCATTCTGGATTCAACTGTGGTTTCAACTGTGCTGAGGCAGTTAATGTAGCTCCAATTGACTGGCTGCCTCACGGACAGATTGCTGTTGAGCTATATCGGGAGCAGGGGCGCAAGACTTCTATATCCCATGATAAACTGTTGCTTGGGGCTGCTAGGGAAGCAGTACGAGCACAGTGGGAGCTTAATTTGCTGAAGAAAAATACGTCTGATAATCTACAATGGAAAGCTGTCTGCGGAAAGGATGGCCTTCTAGCAAAAGTACTCAAGGCGCGCGTTGAGATGGAACAAGTAAGGAGGAGATTTGTTTGCAGTTCTTCACAGGCATTGAAAATGGAGAGCAGTTTTGATGCCACAAGTGAAAGGGAATGCAGTGTTTGCTTTTTTGATTTGCACCTATCTGCAGCTGGTTGCCGTTGTTCCCCTGATCGATTTGCTTGCTTGGATCATGCAAAGCAGTTCTGTTCATGTGCTCCGGATTTCAAATTCTTCCTCTTTCGTTACGATATTAGTGAATTATTAATCCTTGTTGAGGCATTGGAAGGAAAATTAAGTGCAGTTTACAGATGGGCAAAGTTAGATCTTGGGCTGGCACTAACTTCTTATATCACAAACAATGATAGCCAATTTAGTAAATTATTTCAGTCTTCAAAGGAAACACTACTTCCTGAATTGAGATTAGATTCCTTCAACTTGTCTGGTTCTTCTTGTGGCACTGAGCATAAAGAGATGCCCTTGCATCCATTGGTTGTTTCTTTTGATGATTCTCATTTGATAGATGTCCCAATAGAGAATTTGGTGAATTCAGCAAAAAACATTGATCAGATTCAGTGTTATGTACAACAGAGAAAATCGGCAGAAGACGTGTCTTCCTTGGGTCATTTGAACAAACTGTTTACATCTAAAAACTTGACACCTGTTCATGAGATGGCTAATAACAATGCACATTCCAAGAAAGAATCTGTTATTTGCAGATCAAATGTGAGAACCCCTGTTTGTCAGTTGTTTCAAGAGGACACATCATATCCCATGCCTCTTCCTCTAGCTGAACATGGGCCTACCAAAACTTCACTTTCTGGGCATGACAATATTATAATTCTTAGTGATGATGAAACCGATGAGCCGAAGATGACGGACCCAGATAGAGGAAAGGAGCTTTCTCAAAGGTTTATAGGTTCTAGTGATGAAGTAAATCTGTGTAATTATAGAAAAGATCCAGACACAACTATCCCTGCGACAGATGCTGCTGTAAAGGTTGAGAAGGATGCATCTCATGAACATAGGAGTTCTCATTCAACTCATCATTTGCAAGCAAAACAAGAACATCGCTTAATTAATGGGCCAGTTCTAGATTCTACCCCAGTAGATGTTTCTTGCAATATAGGTTTTTCTACTTCAGGATCAGTTAGAAAAATTCAAGCTTCCTCAAGAGGGGAGAGTGGAGATAATTGTCTGGATCATTCGAAGAGTTATGCTCAGAATCCAGTGCATTCTGTCACTTTCAAGCCTAAGAACGAGGACAACTATAAGAAGGTTGGAGGATGTGATGCTTCTAAAATTGCAGACAATGTAAGACCTGTTCATGGAAACTTGTCTTGCAGTCCAAACAACTTGGGAAGATGTTACCGTCAGAAAGGTCCTCGCATTGCAAAGGTTGTCCGGCGGATCAACTGCAATGTTGAACCTCTAGAATTTGGAACTTTGCTTTCTGGAAAGTCATGGTGCAACAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGTGTTAGATACATAGATGTCTTAGATCCAACCAGCACGTGTTATTATATTTCAGAAATTCTTGATGCTGGACGAGACAGACCTCTGTTTATGGTGTCTTTGGAACATAATCCAAATGAGGTCTTCATTCATATATCAGCTGCAAGATGCTGGGAACTGGTAAGAGAGAGAGTGAATCAGGAGATCACAAAGCAACATAAGCTGGGAAGAAATGACCTTACTCCTTTACAGCCTCCTGGCAGCCTCGATGGTTTTGAAATGTTTGGGTTTTCTTCACCAGCGATAGTTCAGGCTATCGAGGCATTGGATCAAAGTCGAGTTTGTAAGGAATATTGGGAATCCCGGCCCTACTCCCGGCCTCAAGGGCAGATTCCACAAGCTTCTCAACCCAATGAGAAAGTTGGAAACGTGGATAGACCATCTGACGTAAGAAACGGTGAAGGTCAAGGGGTCCTCAGCAATCAGCTCGTGTCTGTTGGAGTTGATGCAGCACTAAGGAGCCTATTTAAAAAGGCTGACGCACAAGAATTGAACTCATTATACAGCATTCTCACTGACAACAGGCCAGCAGCTGACAGCAGCTTAATTGCTCAACTTCTCAATGAAGAGATCAACAACCGTTTAAGATGA 4041 0.4167 MALSASTVNWDFSHLDQQHINAFQLFLKILEQALPSIEFISAVICSRSSENQKILQLSLHNHSSHLKLMRIRVQEDNDEFPSVPPGFESYTSFSLNRMEDNEKQNDKNMTSCSASTSASESRLIQAETEVQISDTAKIHRSLRPRRQINHGWYDNSSGEDSDSERLDQNFSSRSCLPRGVIRGCPDCSNCQKVVAAWRPEDACRPDLEDAPVFYPTEEEFQDTLKYIASICSRAEPYGICRIVPPSSWKPPCPLKEKTIWGGSKFSTRVQRVDKLQNRGSKRKMSRIHNNTKRKRRRCTRMGLDNGTIRWPNAGFCEIERFGFEPGPEFTLEIFQQYADDFKAKYFRTNENISNLGGNTTVLEGWEPSVENIEGEYWRIVERPTEEIEVLYGADLETGVFGSGFPRKLSESGSNLPEEYIKSGWNLNNFARLPGSLLSHESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKIWYGVPGKDACKLEEAMRKHLPDLFKEQPDLLHKLVTQFSPSVLKSEGVSVYRCVQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPIDWLPHGQIAVELYREQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTSDNLQWKAVCGKDGLLAKVLKARVEMEQVRRRFVCSSSQALKMESSFDATSERECSVCFFDLHLSAAGCRCSPDRFACLDHAKQFCSCAPDFKFFLFRYDISELLILVEALEGKLSAVYRWAKLDLGLALTSYITNNDSQFSKLFQSSKETLLPELRLDSFNLSGSSCGTEHKEMPLHPLVVSFDDSHLIDVPIENLVNSAKNIDQIQCYVQQRKSAEDVSSLGHLNKLFTSKNLTPVHEMANNNAHSKKESVICRSNVRTPVCQLFQEDTSYPMPLPLAEHGPTKTSLSGHDNIIILSDDETDEPKMTDPDRGKELSQRFIGSSDEVNLCNYRKDPDTTIPATDAAVKVEKDASHEHRSSHSTHHLQAKQEHRLINGPVLDSTPVDVSCNIGFSTSGSVRKIQASSRGESGDNCLDHSKSYAQNPVHSVTFKPKNEDNYKKVGGCDASKIADNVRPVHGNLSCSPNNLGRCYRQKGPRIAKVVRRINCNVEPLEFGTLLSGKSWCNSQAIFPKGFRSRVRYIDVLDPTSTCYYISEILDAGRDRPLFMVSLEHNPNEVFIHISAARCWELVRERVNQEITKQHKLGRNDLTPLQPPGSLDGFEMFGFSSPAIVQAIEALDQSRVCKEYWESRPYSRPQGQIPQASQPNEKVGNVDRPSDVRNGEGQGVLSNQLVSVGVDAALRSLFKKADAQELNSLYSILTDNRPAADSSLIAQLLNEEINNRLR 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1534 1346 Pfam C5HC2 zinc finger 674 723 IPR004198 -
Bisa03g1534 1346 SUPERFAMILY Clavaminate synthase-like 336 611 - -
Bisa03g1534 1346 ProSiteProfiles FYR domain FYRC motif profile. 1162 1253 IPR003889 GO:0005634
Bisa03g1534 1346 Pfam JmjC domain, hydroxylase 451 567 IPR003347 -
Bisa03g1534 1346 PANTHER LYSINE-SPECIFIC DEMETHYLASE 203 1206 - -
Bisa03g1534 1346 MobiDBLite consensus disorder prediction 1256 1272 - -
Bisa03g1534 1346 ProSiteProfiles JmjN domain profile. 210 251 IPR003349 -
Bisa03g1534 1346 ProSiteProfiles JmjC domain profile. 421 584 IPR003347 -
Bisa03g1534 1346 Pfam F/Y rich C-terminus 1164 1248 IPR003889 GO:0005634
Bisa03g1534 1346 Gene3D - 1109 1246 - -
Bisa03g1534 1346 SMART JmjN_1 209 250 IPR003349 -
Bisa03g1534 1346 Gene3D Cupin 195 568 - -
Bisa03g1534 1346 MobiDBLite consensus disorder prediction 1254 1285 - -
Bisa03g1534 1346 FunFam Putative lysine-specific demethylase JMJ16 1108 1246 - -
Bisa03g1534 1346 Pfam F/Y-rich N-terminus 1114 1157 IPR003888 GO:0005634
Bisa03g1534 1346 SMART fyrc_3 1166 1260 IPR003889 GO:0005634
Bisa03g1534 1346 SMART cupin_9 421 584 IPR003347 -
Bisa03g1534 1346 ProSiteProfiles FYR domain FYRN motif profile. 1102 1160 IPR003888 GO:0005634
Bisa03g1534 1346 SMART fyrn_3 1116 1160 IPR003888 GO:0005634
Bisa03g1534 1346 Pfam jmjN domain 211 244 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1534 Bisa-ChrBisa03 20703775 20713216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1534 67 1344 JUMONJI Transcription Factor Family AT1G08620 53.231 0.0 1219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bisa03g1534 JmjC 1.7e-46 CL0029