Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1517 ATGACCCTGTGGGAAGAAGAAAAGGAAAAATCAGAAGAAGGCAGTACTACTAATTCATCCGTAAGGGTTCTGCTCGAACAATCAAGTTTAGCAGGGTGTGTTAGTCATTTTCATGTAACTTTGCTGAAGATGGAGGGAAAAACTGAGGAAGTGGAAGATATTGGGAGTGCTTCTAGTGGTTCATTAACTGACAATTCAGATGACGAGTCTTCAACTTCTGATTTAGATGACGGAGTGCATCTTGAGGAACCTTTGACTGAGGAAGAAATAGAAGATCTGATTGCTGAGTTGTTAGAAGTTGAGAGTAAGGCTGCAGAGGCTCAAGAAGCTCTTGAAGAGGAGTCTCTTGCCAAAGTTGAGAATGAGGTTAGGCGAGAGTTGGCGCAAACTCTTCAAGGGGATGATTTGGAAACTGCTGTTGCAGATGAGATGGCTACTTTAAAAGAAGAGTGGGAAGCTGTTCTGGATGACCTTGAGACCGAAAGTACCTACTTGCTGGAACAACTTGATATGGCTGGTATTGAGCTCCCACGCCTTTATAAGTTGATTGAAAGAGAAGCTCCAAATGGTTGCTGCACTGAAGCTTGGAAAAAGAGGAATCAATGGGTAGGATCTCAGGCAACTGATGAATTTACTGAGTCAGTTGCTGATGCTGAGAAATATCTACAAGTCCACAGACCAGTTAGAAGGCGACATGGTAAATTATTGGAAGAAGGTGCTAGTGGGTTTCTCCAAAAAAAACTTGTTGATGAAACCAGTGAGACTGTAAAGGAAGAAACTGTGGTAGACTGGGAACTGTTTAACAAAATTTTTCATGATGGGGGTGATGCTAATGCTTCATTTGGCAGCAAGAAATGGGCTTCTGTTTATTTGGCAAGCACTCCTCAGCAAGCTGCATCGATGGGACTTGAATTTCCTGGTGTCAATGAGGTGGAGGAGATTGATGATATTGATGGCAATTCTACCGATCCATTTATTGCAGCTGCAATTGCAAATGAAAAAGAACTAGAACTTTCTGATGAACAAAAGAGAAAATTTAAAAAGGTGAAAGAAGAAGATGACGCAATTGTTGACCAGAAACTTCAAATCCGTTTGAAACGAATGAGGTACCGAAAGAATAAAAAACAGCGAGAAGTGTGCTCAGCTGACCCAATGGTGGAGAGCCTCAAACATAAGTCTTCATCTGCTGATTGTTCTAACCCTGGTATGGAGGGAACTGGTGATGATGGTGAAATTATGTCTGACAATGACATAGAAGTTGGATGTCTGAATATGAAGACTAGTAATGTTGATGGTCTTGGTAGCGATTATAATCTTGATAAAGAGAAGCCCATGAATATTGGCCCTTTGTCCGAACTCTCTAAATCTTCAATGGCTGATGTTGCTGAACACAGAGGTACAAAGCGACCAAACAATGGTGAAGTAGATGCTGATATTAAAAAATGTCGAACTGATACTATTGGCAGTGATGATGAAGCTGAAGCGGTTGAAAATAAGTTAGTTTGGAATATGGATACAATAGAAGACCAATCCAAGATAAAAGAAGGTAGTGATACCTGCTTTGCTGATTGTCTTCCTCCGCAGCATCTGGATGAGAAATTTTGCTGCACTGCTTGTGATAAAGTGGCTATTGAAGTTCATGCACACCCTCTTTTGAAAGTGATTATCTGTAGGGATTGCTATTCCTTAATGGAAGAAAAGATACGTTTGAAGGATCTGAATCCTGATCGTTCAGAGTGTTATTGTGCTTGGTGTGGAGGAAGCAGTGAGTTAGTCAGCTGTAAATCATGCAAAATGTTATTCTGCAATAACTGTATAAGGAAGAATCTTGGGGCAGAATTCCTTTCTGAAGTTCAGGCCACTGGTTGGCATTGTTGTTGCTGCCGCCCAAATATCTTGCAAAGACTGTCTTCACAACTAGAGAAAGCTATTGGATCTGATGATTCATCAGTTTCCAGCTCTGGTAGTGATTCAGATAATTCACATGCAGAGATTAATGTTACAATCAGTTCCAAGCGAAGGCGCAAAAAGAAGATCCGGAGGATCCTTGATGATGCTGAGTTAGGAGAAGAAACCAAAAGGAAAATTGCAATTGAAAAGGAACGTCAAGAACGTTTGGAGTCTTTGCGAGTACAGTTTTCTGCCTCATCTAACATCATGAGCTCTTCTGGCTATAATGGGAATTTACCTGAAGGTGCAAGTATTGAGGTCCTTGGTGATGTGCTAACAGGTTACGTAGTGAATGTTGTGAGGGAAAAAGGTGAAGAAGCTGTCAGAATTCCTCCTAGTATCTCAGCTAAACTGAAAGCTCATCAGATTGCAGGGATAAGATTTATGTGGGAGAATATAATACAGTCAATCAGAAAAGTGAAATCTGGGGATAAAGGTCTTGGTTGTATTCTGGCTCACACAATGGGCCTTGGTAAAACCTTTCAGGTGATAGCTTTCTTGTACACAGCTATGAGAAGTATTGATTTGGGCTTGAGAACTGCACTTATAGTCACACCTGTCAATGTGCTGCACAATTGGCGGCAGGAGTTCATAAAATGGAAACCATCAGAACTAAAGCAGCTCAGGGTCTTCATGCTGGAAGATGTATCAAGGGATAGGAGAGCAGAACTGCTTGCTAAGTGGAGAGCTAAAGGTGGTGTCTTTCTGATTGGCTATACTGCTTTTCGAAATTTGTCTTTTGGAAAGCATGTGAAAGATCGGCATGTGGCCCGAGAAATTTGTCATGCCTTGCAGGATGGACCGGACATACTTGTTTGTGATGAAGCCCATATGATAAAGAACATAAAGTCTGACATAACCCAAGCCTTGAAACAAGTAAAATGCCATAGAAGAATTGCACTGACTGGATCACCTCTTCAGAACAATCTCATGGAGTATTATTGTATGGTAGATTTTGTGAGAGAAGGTTTTCTTGGAAGCAGCCATGAATTTAGGAACCGCTTCCAGAATCCTATAGAGAATGGTCAACATACTAATTCAACTCTGGATGATGTGAAGATTATGAATCAAAGATCTCATATCCTGTATGAACAGTTAAAAGGCTTCGTTCAAAGAATGGACATGAATGTGGTGAAGAAGGATTTGCCACCAAAAACAGTCTTTGTTATAACTGTCAAGCTTTCTTCCCTACAGAGAAAACTGTACAAGAGATTCCTCGATGTGCATGGATTCACAAGCGACAGGGCTTCTAATGAAAAAATGAGGAAGAGAAGTTTTTTTGCGGGGTACCAGGCATTAGCTCAGATATGGAACCACCCTGGGATCTTGCAACTGAGAAAAGAAGACAAGGACTATGTTAGACAAGAAGATGCTGTTGAGAATTTTCTTGTGGATGACAGCTCCAGCGACGAGAATTCTGATTATAATGTGCTTGGTGGAGAGAAGATGAGAAGTGCAAATGAACTCCTGCAAGGGAAAGATGGGAATGGCTTTTTTCTGAAGGGTTGGTGGAATGATCTTCTGCATGAAAACAATTATAAAGAACCCAATTACAGTGGCAAAATGGTTTTGCTCCTAGACATACTAACCATGAGTTCTGATGTGGGTGACAAGGCGCTGGTTTTTAGCCAAAGCATACCAACACTAGACCTCATAGAACTTTATCTATCAAAGTTACCTCGACGAGGCAGACATGGCAAATTTTGGAAGAAGGGAAAAGATTGGTACAGGCTGGATGGAAGAACAGAGAGCTCCGAAAGGCAGAAGCTTGTTGAGAGGTTTAATGAGCCTTTCAATAAGAGGGTGAAGTGCACTCTTATTTCGACCAGAGCTGGCTCTTTGGGCATTAATCTTCATGCAGCTAATCGTGTTGTTATAGTTGATGGTTCTTGGAATCCAACATATGATCTCCAGGCTATCTATCGAGCTTGGAGGTATGGGCAGACAAAGCCTGTGTTTGCTTACCGATTACTGGCTCATGCAACGATGGAAGAGAAAATATATAAGCGCCAGGTAACAAAGGAGGGGCTTGCTGCTAGGGTGGTTGATAGACAGCAAGTGTCTAGGACAATATCTAAAGAAGAGATGTTACATCTCTTTGAGTTTGGTGATGATGAGAACCCTGAGACGTTGGCTGAACTGAGCCAAGAGAATGGGCACACTCGTGAGTCAAATAACCTGTTTTCAGTTGGACATTCACTGAAACATACAGTACCACATTCAAATGGAACCAGCTTTTCTGATAAATTAATGGAAAGCTTACTAGGCAAGCATTATCCAAAGTGGATTGGCAATTATCATGAACACGAGACCTTATTGCAAGAGAATGAAGAAGAAAAGCTATCCAAAGAGGAGCAAGACATGGCTTGGGAAGTATACCGGAAAACGTTAGAATGGGAGGAAGTTCAGAGGGTCCCACTTGGCGAGTCTCTGCCTGATCAAAAACCGCAAGTGGCAAATGCGGCAGCCCCTGTGTCAGAGTCTCGCAGCCTCTCACCATTAACCAGGATTAGGAATCGTTTCATGACGCGGAAATGCACCAACCTTGCTCATTTGCTGACGCTTAGAAGTCAGGGCACTAAATTTGGTTGCAGTACAGTCTGTGGGGAATGCGCCCAAGAGATTAGATGGGAAGACTTGAAGAAAGATAAAAGAGTAGCAACATAA 4617 0.4182 MTLWEEEKEKSEEGSTTNSSVRVLLEQSSLAGCVSHFHVTLLKMEGKTEEVEDIGSASSGSLTDNSDDESSTSDLDDGVHLEEPLTEEEIEDLIAELLEVESKAAEAQEALEEESLAKVENEVRRELAQTLQGDDLETAVADEMATLKEEWEAVLDDLETESTYLLEQLDMAGIELPRLYKLIEREAPNGCCTEAWKKRNQWVGSQATDEFTESVADAEKYLQVHRPVRRRHGKLLEEGASGFLQKKLVDETSETVKEETVVDWELFNKIFHDGGDANASFGSKKWASVYLASTPQQAASMGLEFPGVNEVEEIDDIDGNSTDPFIAAAIANEKELELSDEQKRKFKKVKEEDDAIVDQKLQIRLKRMRYRKNKKQREVCSADPMVESLKHKSSSADCSNPGMEGTGDDGEIMSDNDIEVGCLNMKTSNVDGLGSDYNLDKEKPMNIGPLSELSKSSMADVAEHRGTKRPNNGEVDADIKKCRTDTIGSDDEAEAVENKLVWNMDTIEDQSKIKEGSDTCFADCLPPQHLDEKFCCTACDKVAIEVHAHPLLKVIICRDCYSLMEEKIRLKDLNPDRSECYCAWCGGSSELVSCKSCKMLFCNNCIRKNLGAEFLSEVQATGWHCCCCRPNILQRLSSQLEKAIGSDDSSVSSSGSDSDNSHAEINVTISSKRRRKKKIRRILDDAELGEETKRKIAIEKERQERLESLRVQFSASSNIMSSSGYNGNLPEGASIEVLGDVLTGYVVNVVREKGEEAVRIPPSISAKLKAHQIAGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSIDLGLRTALIVTPVNVLHNWRQEFIKWKPSELKQLRVFMLEDVSRDRRAELLAKWRAKGGVFLIGYTAFRNLSFGKHVKDRHVAREICHALQDGPDILVCDEAHMIKNIKSDITQALKQVKCHRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRFQNPIENGQHTNSTLDDVKIMNQRSHILYEQLKGFVQRMDMNVVKKDLPPKTVFVITVKLSSLQRKLYKRFLDVHGFTSDRASNEKMRKRSFFAGYQALAQIWNHPGILQLRKEDKDYVRQEDAVENFLVDDSSSDENSDYNVLGGEKMRSANELLQGKDGNGFFLKGWWNDLLHENNYKEPNYSGKMVLLLDILTMSSDVGDKALVFSQSIPTLDLIELYLSKLPRRGRHGKFWKKGKDWYRLDGRTESSERQKLVERFNEPFNKRVKCTLISTRAGSLGINLHAANRVVIVDGSWNPTYDLQAIYRAWRYGQTKPVFAYRLLAHATMEEKIYKRQVTKEGLAARVVDRQQVSRTISKEEMLHLFEFGDDENPETLAELSQENGHTRESNNLFSVGHSLKHTVPHSNGTSFSDKLMESLLGKHYPKWIGNYHEHETLLQENEEEKLSKEEQDMAWEVYRKTLEWEEVQRVPLGESLPDQKPQVANAAAPVSESRSLSPLTRIRNRFMTRKCTNLAHLLTLRSQGTKFGCSTVCGECAQEIRWEDLKKDKRVAT 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1517 1538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 790 973 IPR014001 -
Bisa03g1517 1538 Coils Coil 1416 1436 - -
Bisa03g1517 1538 MobiDBLite consensus disorder prediction 1 15 - -
Bisa03g1517 1538 MobiDBLite consensus disorder prediction 47 79 - -
Bisa03g1517 1538 Coils Coil 141 161 - -
Bisa03g1517 1538 MobiDBLite consensus disorder prediction 1 20 - -
Bisa03g1517 1538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1177 1345 IPR001650 -
Bisa03g1517 1538 SMART helicmild6 1200 1297 IPR001650 -
Bisa03g1517 1538 Pfam Helicase conserved C-terminal domain 1173 1297 IPR001650 -
Bisa03g1517 1538 CDD ADDz_ATRX 532 630 - -
Bisa03g1517 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 754 1022 IPR027417 -
Bisa03g1517 1538 Gene3D - 741 1022 IPR038718 -
Bisa03g1517 1538 Pfam SNF2-related domain 790 1092 IPR000330 GO:0005524|GO:0140658
Bisa03g1517 1538 ProSiteProfiles ADD domain profile. 524 656 IPR025766 -
Bisa03g1517 1538 MobiDBLite consensus disorder prediction 54 68 - -
Bisa03g1517 1538 PANTHER RAD54-LIKE 64 1535 IPR044574 GO:0016887
Bisa03g1517 1538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1028 1365 IPR027417 -
Bisa03g1517 1538 MobiDBLite consensus disorder prediction 646 667 - -
Bisa03g1517 1538 CDD SF2_C_SNF 1168 1308 - -
Bisa03g1517 1538 Coils Coil 90 122 - -
Bisa03g1517 1538 Gene3D - 1033 1379 IPR027417 -
Bisa03g1517 1538 SMART ultradead3 764 985 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1517 Bisa-ChrBisa03 20511467 20539456 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1517 832 1350 RAD5 or RAD16-like Gene Family AT5G22750 25.614 2.54e-31 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa03g1517 SNF2_N 2e-52 CL0023