Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1501 ATGGTTACTTCTGCGCAGCCCAAACTCAAGTCCACCAAACCCGCGGTGGCAAAGAAGCCGAAGTCCTCGCCGTCGCACCCTCCCTTCGCTGAGATGATCACGGATGCGATCGTATCTCTCAAGGAGAGGACCGGTTCGAGCCAGTATGCCATTACCAAGTTTATCGAGGAGAAGCACAAGCAGTTGCCTCCCAATTTCAGGAAGCTGTTGCTGTACTTTTTGAAGAAGTCGGTGGCTGCTGGAAAGCTCGTTAAGGTCAAGAACTCCTTTAAGGTTCCACCGACTCGATCGGCTCCTACTAAGAAGCCGACGGACGCTAAGCCTGCAAAAGCTCCGTCTAAGCCAAGTGCCAAGACGGCATCTAAGCCTCAGCCTAAGGCCTCTGCGAAAGCGAAGGTAGCCGCTAAGCCAAAAACTGCCACCAAATCTAAGGCTGCTGCAGCAAGTGCTAAAGCGGCAGTGGGGCCGGCAAAGGTGGCTCAGAGATCGGCCAAGACCTCACTGGGGAAAAAGGTTGTGAAGGCGGCAAAGAGTGTGAAGAAGCCAAAGAGTGTAAAATCACCGGTGAAGAAAGCAGTTGTGAAGAAGGCTAAGAAGTAG 600 0.5283 MVTSAQPKLKSTKPAVAKKPKSSPSHPPFAEMITDAIVSLKERTGSSQYAITKFIEEKHKQLPPNFRKLLLYFLKKSVAAGKLVKVKNSFKVPPTRSAPTKKPTDAKPAKAPSKPSAKTASKPQPKASAKAKVAAKPKTATKSKAAAASAKAAVGPAKVAQRSAKTSLGKKVVKAAKSVKKPKSVKSPVKKAVVKKAKK 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1501 199 PRINTS Histone H5 signature 12 33 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa03g1501 199 PRINTS Histone H5 signature 39 56 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa03g1501 199 PRINTS Histone H5 signature 120 134 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa03g1501 199 PRINTS Histone H5 signature 177 196 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Bisa03g1501 199 MobiDBLite consensus disorder prediction 174 199 - -
Bisa03g1501 199 PANTHER HISTONE H1 10 191 - -
Bisa03g1501 199 CDD H15 23 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa03g1501 199 Gene3D - 20 105 IPR036388 -
Bisa03g1501 199 SMART h15plus2 23 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa03g1501 199 FunFam Histone H1 20 105 - -
Bisa03g1501 199 MobiDBLite consensus disorder prediction 85 199 - -
Bisa03g1501 199 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 25 94 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa03g1501 199 SUPERFAMILY "Winged helix" DNA-binding domain 22 104 IPR036390 -
Bisa03g1501 199 MobiDBLite consensus disorder prediction 1 30 - -
Bisa03g1501 199 Pfam linker histone H1 and H5 family 26 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1501 Bisa-ChrBisa03 20298165 20298856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1501 27 93 Single Myb Histone (SMH) Gene Family AT1G72740 37.313 4.72e-09 53.1