Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1488 ATGGCCGACGAAGCCAAGGCCAAAGGCAATGCCGCTTTCTCTTCCGGTGACTTCACCACTGCCATCCGTCACTTTTCCGATGCCATCTCTCTCTCCCCCGACAACCATGTCCTCTATTCCAATCGATCCGCCGCTTACGCCTCCCTTCACAAGTACAGTGAAGCCTTAACCGACGCCAAGAAGACCGTCGAGCTCAGGCCCGATTGGTCTAAGGGCTACAGCCGTCTCGGTGCCGCTCATCTTGGTCTCGGCCAACACGCTGACGCTATTGCTGCTTACAAGAAGGGCCTTGAGATCGATCCCAATAATGAACCACTTAAATCCGGCTTAGCTGATGCCCAGGCGGCGGCTTCCAGTTCCGGTTCGGCGCCATCCATGGGGAATCCTTTCGGCGACGCTTTCTCTGGACCCGATATGTGGGCTAGGCTCACTGCTGACCCCACGACTAGAGCCTATCTACAGCAGCCTGATTTTGTTAAGATGACGCAGGATATTCAGAAGAATCCCAACAATCTGAACCTGTATATGAAGGATCAAAGAATCATGCAAGCCCTTGGTGTTTTGCTCAACCTCAAGATTCGAACCCCGAACGAGGACACTGATATGCCCGAGTCTTCACCTTCGCCTCCGCCGCCGGAGAGGAAGAGAGCTGCTGAAGCTGAACCTGCGAAGGAAGAGAAGCGGCCTGAGCCTGAGCCTATGGAATTGACGGAGGATGAGAAGGAAGCAAAGGAGAGGAAGGCTCAGGCCCAGAGGGAAAAGGAGGCAGGCAATGCGGCCTACAAAAAGAAGGATTTTGAAACAGCAATTCAACATTATTCAAAGGCTATGGAATTGGATGACGAGGATATATCATTTCTCACAAACCGCGCTGCTGTGTACCTGGAAATGGGAAAGTTTGAAGAATGCATAAAAGATTGTGACAAGGCTGTTGAAAGGGGAAGAGAACTGAGATCAGACTTCAAGATGATAGCAAGAGCTTTGACAAGGAAGGGAACTGTGCTGGTCAAAATGGCAAAATGCTCAAAGGATTATGAACCTGCCATTGAGACTTTCCAAAAGGCACTTACAGAACATCGCAATCCTGACACCTTGAAGAAACTGAATGAAGCTGAAAAAGCTAAGAAAGAACTCGAACAGCAAGAATATTTTGATCCACAATTGGCCGATGAGGAGCGTGAAAAAGGTAATGAATTCTTCAAGCAGCAAAATTATCCGGAGGCTGTGAAGCATTACACAGAATCTTTAAGAAGGAACCCTAAAGATCCTAGGACATACAGTAACAGAGCGGCAAGCTACACAAAACTTGGGGCAATGCCTGAGGGTTTGAAGGATGCAGACAAATGCATTGAGCTTGATCCAACTTTTGTAAAGGGTTATACTAGAAAAGGTGCTATACAGTTTTTCATGAAAGAATATGACAAAGCTATGGAAACATATCAAGAGGGGTTGAAACATGACCCTAACAACCAGGAGTTGCTTGATGGCATAAAAAGATGTGTAGAACAAATTAATAAGGCCAACCGTGGGGATATAAGTCCTGAGGAGTTGAAGGAGAGACAGGCGAAGGCAATGCAGGATCCAGAGATACAGAACATTCTTCAAGACCCCGTTATGAGACAGGTATTGATTGATTTCCAGGAAAATCCAAAGGCTGCTCAGGAGCATACAAGGAATCCAATGGTGATGAACAAGATCAAGAAGCTGGTCAGTGCTGGAATTGTCCAGATTAGGTAA 1737 0.4732 MADEAKAKGNAAFSSGDFTTAIRHFSDAISLSPDNHVLYSNRSAAYASLHKYSEALTDAKKTVELRPDWSKGYSRLGAAHLGLGQHADAIAAYKKGLEIDPNNEPLKSGLADAQAAASSSGSAPSMGNPFGDAFSGPDMWARLTADPTTRAYLQQPDFVKMTQDIQKNPNNLNLYMKDQRIMQALGVLLNLKIRTPNEDTDMPESSPSPPPPERKRAAEAEPAKEEKRPEPEPMELTEDEKEAKERKAQAQREKEAGNAAYKKKDFETAIQHYSKAMELDDEDISFLTNRAAVYLEMGKFEECIKDCDKAVERGRELRSDFKMIARALTRKGTVLVKMAKCSKDYEPAIETFQKALTEHRNPDTLKKLNEAEKAKKELEQQEYFDPQLADEEREKGNEFFKQQNYPEAVKHYTESLRRNPKDPRTYSNRAASYTKLGAMPEGLKDADKCIELDPTFVKGYTRKGAIQFFMKEYDKAMETYQEGLKHDPNNQELLDGIKRCVEQINKANRGDISPEELKERQAKAMQDPEIQNILQDPVMRQVLIDFQENPKAAQEHTRNPMVMNKIKKLVSAGIVQIR 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1488 578 SMART CBM 136 175 IPR006636 -
Bisa03g1488 578 SMART CBM 527 566 IPR006636 -
Bisa03g1488 578 SMART tpr_5 325 362 IPR019734 GO:0005515
Bisa03g1488 578 SMART tpr_5 423 456 IPR019734 GO:0005515
Bisa03g1488 578 SMART tpr_5 284 317 IPR019734 GO:0005515
Bisa03g1488 578 SMART tpr_5 250 283 IPR019734 GO:0005515
Bisa03g1488 578 SMART tpr_5 457 490 IPR019734 GO:0005515
Bisa03g1488 578 SMART tpr_5 70 103 IPR019734 GO:0005515
Bisa03g1488 578 SMART tpr_5 389 422 IPR019734 GO:0005515
Bisa03g1488 578 SMART tpr_5 2 35 IPR019734 GO:0005515
Bisa03g1488 578 SMART tpr_5 36 69 IPR019734 GO:0005515
Bisa03g1488 578 FunFam hsp70-Hsp90 organizing protein 3-like 388 502 - -
Bisa03g1488 578 FunFam Putative stress-induced-phosphoprotein 1 126 194 - -
Bisa03g1488 578 FunFam Stress-induced phosphoprotein 1 247 381 - -
Bisa03g1488 578 SUPERFAMILY TPR-like 388 501 IPR011990 GO:0005515
Bisa03g1488 578 SUPERFAMILY TPR-like 249 377 IPR011990 GO:0005515
Bisa03g1488 578 ProSiteProfiles TPR repeat profile. 457 490 IPR019734 GO:0005515
Bisa03g1488 578 FunFam Stress-induced phosphoprotein 1 1 116 - -
Bisa03g1488 578 SUPERFAMILY TPR-like 2 114 IPR011990 GO:0005515
Bisa03g1488 578 MobiDBLite consensus disorder prediction 194 260 - -
Bisa03g1488 578 PANTHER TPR REPEAT CONTAINING PROTEIN 2 550 - -
Bisa03g1488 578 Coils Coil 234 260 - -
Bisa03g1488 578 ProSiteProfiles TPR repeat profile. 250 283 IPR019734 GO:0005515
Bisa03g1488 578 FunFam Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing) 510 578 - -
Bisa03g1488 578 ProSiteProfiles TPR repeat region circular profile. 70 103 - -
Bisa03g1488 578 ProSiteProfiles TPR repeat profile. 2 35 IPR019734 GO:0005515
Bisa03g1488 578 MobiDBLite consensus disorder prediction 214 260 - -
Bisa03g1488 578 Gene3D - 510 578 - -
Bisa03g1488 578 Gene3D - 127 193 - -
Bisa03g1488 578 Pfam Tetratricopeptide repeat 458 490 IPR001440 GO:0005515
Bisa03g1488 578 Pfam Tetratricopeptide repeat 71 103 IPR001440 GO:0005515
Bisa03g1488 578 Gene3D Tetratricopeptide repeat domain 388 509 IPR011990 GO:0005515
Bisa03g1488 578 Pfam STI1 domain 137 190 IPR041243 -
Bisa03g1488 578 Pfam STI1 domain 519 570 IPR041243 -
Bisa03g1488 578 Coils Coil 361 381 - -
Bisa03g1488 578 MobiDBLite consensus disorder prediction 104 131 - -
Bisa03g1488 578 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Bisa03g1488 578 Gene3D Tetratricopeptide repeat domain 247 383 IPR011990 GO:0005515
Bisa03g1488 578 Pfam TPR repeat 257 298 - -
Bisa03g1488 578 Pfam TPR repeat 396 437 - -
Bisa03g1488 578 ProSiteProfiles TPR repeat profile. 70 103 IPR019734 GO:0005515
Bisa03g1488 578 ProSiteProfiles TPR repeat profile. 389 422 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1488 Bisa-ChrBisa03 20090291 20093747 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1488 388 484 U-box Gene Family AT3G07370 27.835 8.51e-06 45.8