Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1398 ATGAGCAAGCGAATCCCTATCCCGCCGATTTCAATCTCTTCCTGCTCTAGAAATGGAATCATACCCATCAGCTTCCTCATCTTCCTCCTCCTCATCCCCATAGTCGGAGCACAGCCTCCACCCAGTAATAATGCCCAAGATCAGCTCAACAACTACGCCTTCACCCCATCCATGGCTATCATCATCGTCATATTAGTCGCCGCTCTGTTCCTCATGGGTTTTTTCTCCATCTACATCCGCCACTGCGCCGATTCTCCCTCCGGCAGTATCCGACCCCTGGGTCTCGGCTCGGCTGCCGCCCGTTCCCGACGCGCCCAGCGTGGCCTGGACCCTGCCGTCATCGAGAAGTTCCCAACTCTGGAGTACTCCGAGGTTAAGATCCACAAGATAGGGAAAGGCGCTCTGGAATGCGCCGTTTGCTTATGCGAGTTCGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGATCACGTTTTCCATCCCGAATGTATCGACGAGTGGTTGGCTTCCCATACCACTTGCCCCGTTTGCCGAGCCAACCTCGTTCCTCAGCCAGGCGAGTCCCTCCACGGTCTTCCCATCGTCAACCCTGAACCAGATGTTGAAGCTCAAAACGACACCGTCCAGCCCGAATCTCAGCACCAACACGTTGCGGAGGTTGACCGACAACCGCCCGAGCCTGAAGTTCTATTCCCCAATCAGACGATGAAGCGAAACCGCACGCGAGGGTCTCGGTCGGGTCGGCCACGGAGCTTTCCCCGTTCGCACTCGACCGGCCACTCCTTGGTCCAGCCCGGGGAAAACACGGAGCGGTTCACGCTGAGACTGCCGGTCGAATTGAGGAATCAGATACTGAACCGGGAATTGCATCGGTCGACGAGCTTGGTGGTCTTGCCCAGAGAAGGTAGTTCGAGGCGGGGCTATCGCACCGGTGATGGTAGTAGCAGAGGCAGGTTTTCGAGGCGGCTTGACCGGGGAGCTAAATCGGACCGATGGGTTTTCACGATGGCGCCGCCGTTCTTAGTGAGGGCATCGTCTATTAGGGCCCCGAAAGTGGGCGGCAGCGCCGGCGAAGGAACCTCCACTCAAACGCCGCCGCCGGCGGATGTGCCCCGGCCTCCGGTTTAA 1131 0.5836 MSKRIPIPPISISSCSRNGIIPISFLIFLLLIPIVGAQPPPSNNAQDQLNNYAFTPSMAIIIVILVAALFLMGFFSIYIRHCADSPSGSIRPLGLGSAAARSRRAQRGLDPAVIEKFPTLEYSEVKIHKIGKGALECAVCLCEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPQPGESLHGLPIVNPEPDVEAQNDTVQPESQHQHVAEVDRQPPEPEVLFPNQTMKRNRTRGSRSGRPRSFPRSHSTGHSLVQPGENTERFTLRLPVELRNQILNRELHRSTSLVVLPREGSSRRGYRTGDGSSRGRFSRRLDRGAKSDRWVFTMAPPFLVRASSIRAPKVGGSAGEGTSTQTPPPADVPRPPV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1398 376 CDD RING-H2_EL5-like 136 179 - -
Bisa03g1398 376 Pfam Ring finger domain 136 179 IPR001841 -
Bisa03g1398 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 184 IPR013083 -
Bisa03g1398 376 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Bisa03g1398 376 MobiDBLite consensus disorder prediction 346 376 - -
Bisa03g1398 376 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 15 - -
Bisa03g1398 376 SMART ring_2 137 178 IPR001841 -
Bisa03g1398 376 MobiDBLite consensus disorder prediction 306 323 - -
Bisa03g1398 376 MobiDBLite consensus disorder prediction 251 269 - -
Bisa03g1398 376 PANTHER RING FINGER DOMAIN-CONTAINING 38 188 - -
Bisa03g1398 376 MobiDBLite consensus disorder prediction 190 269 - -
Bisa03g1398 376 FunFam E3 ubiquitin-protein ligase ATL6 97 185 - -
Bisa03g1398 376 MobiDBLite consensus disorder prediction 302 323 - -
Bisa03g1398 376 SUPERFAMILY RING/U-box 114 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1398 Bisa-ChrBisa03 18842869 18843999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1398 19 357 Rapid Response to Elicitors AT3G05200 47.093 9.38e-95 286