Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1368 ATGGCAGACTCACAGTGTAATTCGAAAATTTTCAGTGTTCGAATTGTCTCCATCGACTACTACATAGCACCGCCGATCCCAGGCCTGGATATCTGTTACAGCAGCTTCCATGGTGGAAAGGTGAATGAGGTTCCTGTAGTAAGAATATATGGTTCTACTCCAGCTGGACAGAAAACTTGCTTGCACGTACATCGGGCTTTGCCCTACATGTATGTGCCATGTGCAGATATACCTCTTCAGCCAGATCAAGAAGGAGATGTGTACACGTATAAGGTATCTGCTTCTCTTGAGAAAGCCTTGAAGCTTAAAGGTGGCATTGGTTCAGTGAGACAGCATGTACATGGCTGCAGCCTTGTGAGAGCAAGGAAGTTTTATGGTTATCATTCATCAGAGGAGTTATTTGTGAAGATATATCTATATTATCCACAAGATGTCTCCCGTGCAGCTAATCTACTATTGGCTGGTGCTGTTTTTGAAAAAAGCTTACAGCCCTATGAATCACATATTCCCTATATTCTACAGTTGCTGGTCGACTATAATTTGTATGGCATGGGTCATCTGCACCTATCAAAGTTGAAGTTTCGCCACCCCATACCAGATTGTTCTCACAAGAAATTAAATTTCAATAGCCAACAGACAGTGGCAGATCTAGATGGTGATGCATCTTTAGGGTCAGCAATGTGGACATCCTCTATGATCTCAACCGATTGGATGTGGCAATCTCCTAGTGAATTGGTTGTTTCATCAATTCCTGAGGCTCATTGCCCTAAACGTCAAAGCACATGTGAACTGGAGGGTGATACTTCTGTAGATGAGATTCTTAATCAGCAGTTCAAAATGTATTCGTCCCTCTCACAAACCCGTTCAGATGTGCAAATGGTTCAGTCACTTATGCTGATATGGAAGGAGCAGCAGGAAAGGACTGGGATTTATGAGGTTACTATGCCTCCTGATCCCGAAAAACCACCACCAGAAGTTGTTATGAAAAATCTCTCCGCTGGTCTTGACTTTGAGAAGAAGTTTCTTGAATTGTGCAGTAAATCTGAAACCTGTTCATTTTATACTCCCTCTGAGAAGCAACTAAGAGAAACAGATATAATAGGCTTAGCATCGCCACCGGCCTCACTATGTGAAGATGCCAAATTGCATGAAGGAGGGAGTGACATAAATCTCAGATTGTCTACTGTTGATGAAAAGCCATCATCTGAAATGATTGGAACATTGAACATAAAGGCTGCAGATAAGGAAGCTCTGAATCTCCTAAAGTGGCTCGCAACTTCTCAAGCGGCAGAGGATATAAACTCTGATGATGAACTTATTCGTGAAACCATTTTGAGTCCGTTGTTACCTGCTACAACAATTGATAGAGTGCTGGAGAAAGCTAATATGGATTATGAGAGTGCATCCCAAAAGGAATGTCAGGATATTCTAGATTCAATTGATGATCTACTTGAGTTGGAGTCATCAAAGAAAAAACTGCCTTTTCCCACAAATGTTGAACATCCTATTGAGTTTTCCTACAATATGATTCCTCAAGTTGATGGTTCCGGTGATGATGCGTTTTCAAGACCATGTGCTAGTTCAGCTGGAATTTCATTTGCAGTAGATAAAAAAAGTGAATCCAAAAGGGCTTCCGAATACCATGTACTGCAGAATGCCAACACAAATACTTTAAGTAGAGAAAACAGGAATAAATTGTGGGGATCTTTGCCATTATCCATGACCCATAACAATGTTGAATATGGCAGTTTACATGTTGCCCATCCATTTGAATGTGGAACCGGAGATTCTGGTGGCTCTGATTATTTGACAAGAGATGACATTGATAATAGTGCTTGTGATATAATGAATGAGGATAAAGATGCTTCATTTTTAAAGGAGGAAGGTACATTGGTTAATTGCTCTCTGCGGGACTTGATGAGGAGAAAGAGATGCTATCGAGTTGAGCAAGTTGACTCTGAGTCTGGAATAATTAAAAAGCTCTTTTTAGAGAGGGATGAGAAACAGAACGTATGTCTTTGGCACAAACAAATGGATTTGAAAACACAGAAGACTGATGAAGGAGAAACAGAAGTCCAGAAGGACCATGATCTTAAAATGAGCAATCATGATTATTTAGTGCATGGAAAACTGCCTCTCGTAGGTGGCAGTGACAGTTCTTTACAGGCTAGCTTGCTGAAAGATGAACAATTTGGCCAACCTAAAATGGATGGTCTGGAAGCAAGGACAGAATTGATAAACTCCTCAGATGGAGATCCTTCTTTGATCTGTACTGGACCAGGCCTCTATAAGCCTAAAAAGTTTCACTCTACTTGTTCTACAGATTACTCCAAGGCTTCCAGTGGTAAAAAGTTCAATGTTGACCCAACATATGTACAAACTGCAGCTTCTGATGCTCCTAACAATAAGTTTGATCCCTTTTTTGATGTTCAGCAGTTGATAACAGATGCTGAATGTATATTCGGAGCTCCTGACAGTTGTCAGCAAATTGACTCTGCAGCTTTGAGTTGTGTACAGAGCTCTTCTATTGAGAATGCAGTGTCTGGCAAAGATAATTGCATATATAAATGTTCTCATGAAAGCAAATCTTATGAGCAACATGGTCAAATGGAGTTTTATGAGAATGCTGTAGGCATGAATAGTGCAAGTGGCATGCAGGTATTGCAATGTGTGAAAAATGATGAAAAAAAACCTAGAGAAAATTTGGGTTTTTGCAAGACTATTGGCTCAGAACCCATTGTTGATGACGTGGTGGATAATCACATGAAATTAACTATAGACAGGACATCTCCTGTGGCAGATAGGAATCCTGAAAATGATCCATTCTTGCCAACTGTCTCTGATTCTCATTTGCATTTGGATGAGGAAAGTTGTGATGAATTGTCAGGGGGTTCCCAGAAAGAGATGGAAATTTGCAACAAGCGTGTTGCAATTAGTGCCCCTAGTTCTCAAGTGAAGAAGGTCTTGGGTATTGCAACTCACTATCAAAATGATGGCTCTTACCTATGCCTATTGAAACCCAAAATTTCGCCTCCTTCTGCGGATAGTGTTCAGAGATGGCTATTTTCTGATGAGAGAGATCAAATGTTTCAAGAAACTGATGCAAAGGATAAAGATGTGCCTGAATGCTCTACCAAACTTCATCTTGGGTCCAAGCAGGACCAAGATGTTGATCCTGAAAAGAAGCCTCCATGCATTGGTGGAGAACCAATAAAAGGAATTAAAGCATGCTCAGGTGGTTCAGAAGATATTTCCCAGGTATCGGGCCCTGATGGGAAATCAAGGTCTACTCCTCTGAGTCAAATTGGATTTCGAGATCCTGCAAGTATTGGCTGTGGACAGCAATTGACATTACTTAGTATAGAGGTTCTTGCGGAATCAAGAGGAGACCTTATGCCTGATCCTCGGTTTGATGCCATCAACATTGTTGCTTTTGGTTTTCAAAATGATAGTGACACTACTGTTGATGTTCTTGTCCTTTTGCATAGTAAACTTGAACCTTGTCAAAGAAGTTTTGATGGTCTATCAGGCTGTAAGGTGTTGGTCTTCACTGATGAAAAGTACTTGCTAAAAGAAGTAATCAAGATAGTGTCCTCATCTGACCCAGATGTTTTGATGGGTTGGGATATTCAAGGGGGTTCTCTTGGTTTTTTAGCAGAAAGGGCTTCGCATCTTGGTTTAGGATTGCTTAACAGTTTATCACGTACTCCATCTGAGTCTTTCATTGCTTCTGAGGATACTGGAACTTCTGAGCTTATATTGGAACCTGCCATTCCTGATATATCTGGTTCAGATGGTTTTGTACAAGAAAGTTCAATAATTGAGGATGAATGGGGACGAACACATGGCAGTGGAGTTCATGTTGGAGGTAGAATTGTCCTTAATGTATGGCGACTGATCCGTGGAGAAGTTAAGCTCAATTTATACACAGTTGAATCTGTAGCTGAAGCTGTATTGAGGCGGAAAGTTCCGTCATTTCACTGCAAGGTGCTGACAAAGTGGTTTTCTAGTGGTCCTGGACGTGCAAGATATCAGTGTATCAAATATATTATTGAGAGAGTGAAATTGAATCTTGAGATATTAAGCCAACTTGATATGGTAAATCGAACATCAGAACTTGCTCGTATATTTGGTATAGATTTTTTTTCTGTTCTCTCCAGAGGTTCACAGTATCGTGTTGAATCCATGTTTCTGAGGTTGGCACATACACAAAACTATCTTGCTATCTCTCCTGGGAATCAACAGGTGGATATTGCTAACCTCCACAATAATAGTGAGGAGGTCGCTTCTCAACCTGCCATGGAATGCCTGCCGCTTGTAATGGAACCAGAGTCAGGATTTTATTCAGAACCTGTTGTTGTATTTGATTTTCAGTCTTTATATCCTTCCATGATAATTGCATACAACCTTTGCTTTTGTACATGCCTCGGAAAAGTTGTGGCGTCAAATGCAAACACACTTGGGGTTAGTTCATTTTCACCAGAGCCACATGTTCTGCAGGATTTAAAAGATCAGATATTGCTCACTCCAAATGGTGTTATGTTTGTTCCTTCCAAGGTTCGTCGAGGTATACTGCCGCGCTTATTGGAAGAAATTTTATCAACTAGGGTGATGGTGAAACAAGCAATGAAAAAGTTGGCACCTTCGCAGCAAGTTCTTCAGCGGATATTTAATGCAAGACAGCTTGCTTTGAAGCTTATATCAAATGTAACATATGGCTATACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCGGAGCTTGCAGACAGTATTGTTCAATGCGGCCGTTTTACATTGGAAAAGGCTATATCATTTGTAAATCTACATGAAAAATGGAATGCAAAAGTTATTTATGGAGATACTGATAGCATGTTTGTGCTTCTTAAAGGACGAACTATTAAAGAATGCTTCCAAATTGGGAGTGAGATTGCTGCTGCTGTCACTGCTATGAATCCTAGTCCTGTGACCCTGAAACTGGAGAAAGTTTATCACCCATGTTTCCTCCTTACTAAGAAGCGATATGTTGGTTACAGTTATGAAAACCCCCATCAAACTGAGCCAGTCTTTGACGCTAAAGGTATTGAGACGGTTCGTAGGGACACATGTGGTGCAGTTGCAAAGATAATGGAACAGTCTTTGAGGCTCTTTTTTGAGCATCAGGATTTATTGGAGGTAAAAACTTATTTACAACGGCAGTGGAAGAGAATTCTTTCAGGCAGAGTCTCCCTTAAAGATTTTGTCTTTGCTAAGGAGGTTCGTTTGGGTACCTACAGTGCAAGGACCTCATCACTACCTCCTGGTGCAATTGTAGCCACCAAGGCAATGAGGGTTGATCCTAGGGCAGAACCACGTTATGCTGAGAGAGTACCTTATGTTGTAATCCATGGAGAGCCCGGAGCCCGCTTGGTTGATATGGTTGTGAATCCATTGGAAGTTTTGGCAATTGATTCCCCATTCAGAATAAATGACTTGTATTACATTAACAAACAAATAATACCTGCTTTGCAGCGGGTATTTGGGCTTGTTGGTGCTGACCTGAACCAATGGTTTTCAGAGATGCCCCGTTCTGTAAGGGAAGCCTGTGCAAAGCATACCTTTTCTCCAAATTTACATCGTACAAGAATTGACTTTTACTATCTGTCAAAGCACTGTATACTGTGCGGTGGGATGGTTCAGGCATCTGCCCATATATGTAGTCAGTGTTCTCAAAATGGAGTGGCAGCTGCAGCAGCTGTGATTAGTAAAACTTCAAAGTTGGAGCAAGAAATGCAACATCTTGTTGCTATATGTCACCATTGTGGAGGTGGGGACAGGCTTATGGAAAGTGGTGTGAAGTGCACATCAATGTCATGCTCGGTCTTTTATGAGAGACGGAAGGTTCAGAAAGAACTACTAGCTATGAACCATGTTGCTGCAGGTGAAGGCTTCTATCCAAAATGCATGATCGAGTGGTTCTAA 5961 0.4113 MADSQCNSKIFSVRIVSIDYYIAPPIPGLDICYSSFHGGKVNEVPVVRIYGSTPAGQKTCLHVHRALPYMYVPCADIPLQPDQEGDVYTYKVSASLEKALKLKGGIGSVRQHVHGCSLVRARKFYGYHSSEELFVKIYLYYPQDVSRAANLLLAGAVFEKSLQPYESHIPYILQLLVDYNLYGMGHLHLSKLKFRHPIPDCSHKKLNFNSQQTVADLDGDASLGSAMWTSSMISTDWMWQSPSELVVSSIPEAHCPKRQSTCELEGDTSVDEILNQQFKMYSSLSQTRSDVQMVQSLMLIWKEQQERTGIYEVTMPPDPEKPPPEVVMKNLSAGLDFEKKFLELCSKSETCSFYTPSEKQLRETDIIGLASPPASLCEDAKLHEGGSDINLRLSTVDEKPSSEMIGTLNIKAADKEALNLLKWLATSQAAEDINSDDELIRETILSPLLPATTIDRVLEKANMDYESASQKECQDILDSIDDLLELESSKKKLPFPTNVEHPIEFSYNMIPQVDGSGDDAFSRPCASSAGISFAVDKKSESKRASEYHVLQNANTNTLSRENRNKLWGSLPLSMTHNNVEYGSLHVAHPFECGTGDSGGSDYLTRDDIDNSACDIMNEDKDASFLKEEGTLVNCSLRDLMRRKRCYRVEQVDSESGIIKKLFLERDEKQNVCLWHKQMDLKTQKTDEGETEVQKDHDLKMSNHDYLVHGKLPLVGGSDSSLQASLLKDEQFGQPKMDGLEARTELINSSDGDPSLICTGPGLYKPKKFHSTCSTDYSKASSGKKFNVDPTYVQTAASDAPNNKFDPFFDVQQLITDAECIFGAPDSCQQIDSAALSCVQSSSIENAVSGKDNCIYKCSHESKSYEQHGQMEFYENAVGMNSASGMQVLQCVKNDEKKPRENLGFCKTIGSEPIVDDVVDNHMKLTIDRTSPVADRNPENDPFLPTVSDSHLHLDEESCDELSGGSQKEMEICNKRVAISAPSSQVKKVLGIATHYQNDGSYLCLLKPKISPPSADSVQRWLFSDERDQMFQETDAKDKDVPECSTKLHLGSKQDQDVDPEKKPPCIGGEPIKGIKACSGGSEDISQVSGPDGKSRSTPLSQIGFRDPASIGCGQQLTLLSIEVLAESRGDLMPDPRFDAINIVAFGFQNDSDTTVDVLVLLHSKLEPCQRSFDGLSGCKVLVFTDEKYLLKEVIKIVSSSDPDVLMGWDIQGGSLGFLAERASHLGLGLLNSLSRTPSESFIASEDTGTSELILEPAIPDISGSDGFVQESSIIEDEWGRTHGSGVHVGGRIVLNVWRLIRGEVKLNLYTVESVAEAVLRRKVPSFHCKVLTKWFSSGPGRARYQCIKYIIERVKLNLEILSQLDMVNRTSELARIFGIDFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVDIANLHNNSEEVASQPAMECLPLVMEPESGFYSEPVVVFDFQSLYPSMIIAYNLCFCTCLGKVVASNANTLGVSSFSPEPHVLQDLKDQILLTPNGVMFVPSKVRRGILPRLLEEILSTRVMVKQAMKKLAPSQQVLQRIFNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRFTLEKAISFVNLHEKWNAKVIYGDTDSMFVLLKGRTIKECFQIGSEIAAAVTAMNPSPVTLKLEKVYHPCFLLTKKRYVGYSYENPHQTEPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHQDLLEVKTYLQRQWKRILSGRVSLKDFVFAKEVRLGTYSARTSSLPPGAIVATKAMRVDPRAEPRYAERVPYVVIHGEPGARLVDMVVNPLEVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLNQWFSEMPRSVREACAKHTFSPNLHRTRIDFYYLSKHCILCGGMVQASAHICSQCSQNGVAAAAAVISKTSKLEQEMQHLVAICHHCGGGDRLMESGVKCTSMSCSVFYERRKVQKELLAMNHVAAGEGFYPKCMIEWF 1986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1368 1986 Gene3D Helix hairpin bin 1518 1578 - -
Bisa03g1368 1986 PRINTS DNA-directed DNA-polymerase family B signature 1561 1573 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bisa03g1368 1986 PRINTS DNA-directed DNA-polymerase family B signature 1617 1625 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bisa03g1368 1986 PRINTS DNA-directed DNA-polymerase family B signature 1452 1465 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bisa03g1368 1986 FunFam DNA polymerase zeta 1519 1578 - -
Bisa03g1368 1986 Pfam C4-type zinc-finger of DNA polymerase delta 1885 1958 IPR025687 -
Bisa03g1368 1986 MobiDBLite consensus disorder prediction 1050 1100 - -
Bisa03g1368 1986 CDD DNA_polB_zeta_exo 1113 1362 - -
Bisa03g1368 1986 Pfam DNA polymerase family B 1381 1840 IPR006134 GO:0000166|GO:0003677
Bisa03g1368 1986 FunFam DNA polymerase 1694 1861 - -
Bisa03g1368 1986 Gene3D DNA Polymerase, chain B, domain 1 29 196 - -
Bisa03g1368 1986 MobiDBLite consensus disorder prediction 1050 1065 - -
Bisa03g1368 1986 FunFam DNA polymerase 30 196 - -
Bisa03g1368 1986 Gene3D - 1694 1860 IPR042087 -
Bisa03g1368 1986 PANTHER DNA POLYMERASE ZETA CATALYTIC SUBUNIT 5 1978 IPR030559 GO:0006281|GO:0016035|GO:0019985
Bisa03g1368 1986 Gene3D - 1144 1433 IPR036397 GO:0003676
Bisa03g1368 1986 Gene3D Palm domain of DNA polymerase 1438 1683 IPR023211 -
Bisa03g1368 1986 MobiDBLite consensus disorder prediction 1081 1100 - -
Bisa03g1368 1986 SMART polmehr3 1114 1631 IPR006172 GO:0000166|GO:0003676|GO:0003887
Bisa03g1368 1986 CDD POLBc_zeta 1388 1848 - -
Bisa03g1368 1986 Pfam DNA polymerase family B, exonuclease domain 1119 1249 IPR006133 -
Bisa03g1368 1986 Pfam DNA polymerase family B, exonuclease domain 55 207 IPR006133 -
Bisa03g1368 1986 SUPERFAMILY DNA/RNA polymerases 1439 1853 IPR043502 -
Bisa03g1368 1986 FunFam DNA polymerase 1123 1435 - -
Bisa03g1368 1986 ProSitePatterns DNA polymerase family B signature. 1619 1627 IPR017964 GO:0000166|GO:0003676
Bisa03g1368 1986 SUPERFAMILY Ribonuclease H-like 27 1386 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1368 Bisa-ChrBisa03 18449972 18473126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1368 39 209 Core DNA Replication Machinery Family AT5G63960 25.568 2.43e-10 63.9