Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1360 ATGTCGAATAACACAAGCGGTGACAGTGGGAGCTTCTCCACGGAGAACGCCGTAGACGGCGGAGCTAAACGGCCGTCGGAGCTACTTGGTCAGTTTCACAGTCCCAATTCTCTTACTTCAACTACAACTAATAGCAATGGTTCCAACACTCCTCCACCTCCTAAGAAGAAGAGAAACCTTCCAGGAAATCCAGATCCAAGCGCAGAAGTGATAGCTCTATCACCGAACGCCCTAATGGCGACGAACCGATTCGTATGCGAGATCTGCAACAAAGGGTTTCAGAGAGACCAGAACCTGCAACTGCACCGGCGAGGCCACAACCTGCCGTGGAAGCTGAAGCAGCGAGCCACGACGGAGGTTCGAAAGCGGGTGTACGTGTGCCCCGAGCCGACGTGCGTGCATCACAATCCGGCTCGAGCCCTGGGCGATCTCACCGGCATCAAGAAGCACTTCTGTAGAAAGCATGGCGAGAAGAAGTGGAAGTGTGAAAAGTGTTCAAAGAAGTATGCGGTTCAGTCTGATTGGAAGGCGCATTCTAAGATATGTGGAACCCGAGAGTACAAGTGTGACTGTGGCACCATATTTTCCAGAAGAGACAGTTTCATCACACACAGAGCTTTCTGTGACGCCCTGGCTGAGGAGAATAACAAAGCCAACAACAACGATCAGAGACCAATAGCAAACCTGCATGTTCCTTCATTACCAATCAACAACACCAACATAAATCCCAACCCACAAATTGTGACAACAATGGATAACAGCAACAACTCCAACAACAATAGGCATCCATTGTCACTCCTTCAGGACCTCATGTCAGTGCCTTCAAATAAGCCCTTCAACACCAACAACAACAATAACATGAACACTGCAGCATCCTTATTCACTAGAACCCTTTCATCATCAACCTCCTCATCACTTCCGTCTCTTCAACTCAGTTCAAATAATTCCCTAAACATACTGGAAGAAAATAATATTAATGCCCACCAACTTCACCTACCTCCTCCTGCTGCTGCCATGTCTGCGACGGCGCTGCTTCAGAAGGCTGCTCAAATGGGAGCCACGGTGGCGGAAAAGGGTTTTGTCACGACCAACATGGCACCTCCTTCGTTTGCTTCAAACGTTAATGGACATTCCTCCTTCATTAACAACGGTCACTACATGCAGAATGTTACTGGGCAAGAGGTGGATCATGTTTCCGATGGGCAGTTTGTTGGGATGAACAGTGTGGATATGTTTAATGCTATCATGGATCAAACCAGAGCTTTTTCCAAGATCGTAGAGGAGAATAACAGTATGGGTAATAATGGAGTTTTGCATGGTGGGTCTGGTAGGGCTGTTAATTTTGGTGGAGCTAAGGGAAATAATGGGGATGTGATGACTTTGGATTTCTTGGGGATAGGAGGAGGAGGTGGTGGTGGAGGGTCACATGGGGTTTTCTATGGCACACAACATGCAGAGAATAAGGGTATAAGAGGAGATGAACTCTGGAGAAACTGGTCAGCCAAGAATGCAGGGTTTGAATCATTTTCAGCAACAAGTAGCATTAACTGA 1551 0.4758 MSNNTSGDSGSFSTENAVDGGAKRPSELLGQFHSPNSLTSTTTNSNGSNTPPPPKKKRNLPGNPDPSAEVIALSPNALMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRATTEVRKRVYVCPEPTCVHHNPARALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANNNDQRPIANLHVPSLPINNTNINPNPQIVTTMDNSNNSNNNRHPLSLLQDLMSVPSNKPFNTNNNNNMNTAASLFTRTLSSSTSSSLPSLQLSSNNSLNILEENNINAHQLHLPPPAAAMSATALLQKAAQMGATVAEKGFVTTNMAPPSFASNVNGHSSFINNGHYMQNVTGQEVDHVSDGQFVGMNSVDMFNAIMDQTRAFSKIVEENNSMGNNGVLHGGSGRAVNFGGAKGNNGDVMTLDFLGIGGGGGGGGSHGVFYGTQHAENKGIRGDELWRNWSAKNAGFESFSATSSIN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1360 516 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Bisa03g1360 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Bisa03g1360 516 Gene3D Classic Zinc Finger 84 127 - -
Bisa03g1360 516 Gene3D Classic Zinc Finger 139 219 - -
Bisa03g1360 516 SMART c2h2final6 160 180 IPR013087 -
Bisa03g1360 516 SMART c2h2final6 125 155 IPR013087 -
Bisa03g1360 516 SMART c2h2final6 84 106 IPR013087 -
Bisa03g1360 516 MobiDBLite consensus disorder prediction 30 53 - -
Bisa03g1360 516 MobiDBLite consensus disorder prediction 1 68 - -
Bisa03g1360 516 MobiDBLite consensus disorder prediction 1 16 - -
Bisa03g1360 516 Pfam Zinc finger, C2H2 type 84 106 IPR013087 -
Bisa03g1360 516 FunFam protein indeterminate-domain 12-like 63 131 - -
Bisa03g1360 516 SUPERFAMILY beta-beta-alpha zinc fingers 83 180 IPR036236 -
Bisa03g1360 516 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 482 IPR031140 -
Bisa03g1360 516 FunFam protein indeterminate-domain 5, chloroplastic-like 138 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1360 Bisa-ChrBisa03 18269592 18273983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1360 55 354 IDZ Gene Family AT5G66730 54.674 8.78e-120 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa03g1360 zf-C2H2 0.0052 CL0361