Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa03g1338 | ATGAGTAGCCGATCAAGTCGCACCATCTATGTTGGAAATCTTCCTGGTGATATTCGCCTGAGAGAAGTTGAGGATCTTTTTTACAAGTATGGTCCCATTGTTGACATTGATTTAAAAATCCCTCCAAGACCACCAGGTTATGCTTTTGTTGAGTTTGAGGATCCTCGTGATGCTGAAGAGGCAATTCGTTATCGAGATGGTTATAATTTTGATGGATTTCGATTACGAGTTGAACTTGCACATGGTGGGCGGGGATCTTCATCATCAGTAGACCGCTATAGTAGTTATAGTGGTGGTGGTAGCCGTGGAATCTCGAGGCATTCTGACTATCGTGTGCTGGTCACTGGATTACCTCCTTCAGCTTCTTGGCAAGACTTGAAGGATCATATGCGTAAAGCTGGTGATGTATGTTTTTCTCAAGTCTTCCGTGAACGTGGTGGCATGACTGGGATAGTGGATTATACTAATTATGAGGATATGAAATATGCTATCAGGAAACTTGATGACTCAGAATTCCATAATGCTTTCTCTCGGGCATATATACGGGTGAGAGAATATGATCGACGAAGTTATTCTAGGAGTCCTAGCCGTGATTCAAGGAGGAGCTATTCTAGAAGTCGGAGCCGCAGTCCTTATATGTCAAGCAGTCGAAGTCGTAGCTACAGTAGCAGGAGCCGAAGCTTGTCTCCAAAGGCTAAACATTCGCGGCGATCATTGTCTAGACTTGTCAGCACAATTCTTATGTGCAAAGGTCATAAGGGCATTGGTGTAGTGGTTCGTCAGATGTGGCTTTTTGCGGCGACCTGGGGACTGCATGTTAGGATCTTGATGGCATGTGGTGCTCAAACGCCTGCAACTTTTTTGGTCGAGACTGGATGA | 879 | 0.4482 | MSSRSSRTIYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDAEEAIRYRDGYNFDGFRLRVELAHGGRGSSSSVDRYSSYSGGGSRGISRHSDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYEDMKYAIRKLDDSEFHNAFSRAYIRVREYDRRSYSRSPSRDSRRSYSRSRSRSPYMSSSRSRSYSSRSRSLSPKAKHSRRSLSRLVSTILMCKGHKGIGVVVRQMWLFAATWGLHVRILMACGAQTPATFLVETG | 292 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa03g1338 | 292 | CDD | RRM2_SF2_plant_like | 110 | 185 | - | - | |
| Bisa03g1338 | 292 | FunFam | serine/arginine-rich splicing factor SR34A-like | 110 | 187 | - | - | |
| Bisa03g1338 | 292 | Gene3D | - | 110 | 187 | IPR012677 | - | |
| Bisa03g1338 | 292 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 7 | 82 | IPR000504 | GO:0003723 | |
| Bisa03g1338 | 292 | PANTHER | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN | 4 | 232 | - | - | |
| Bisa03g1338 | 292 | FunFam | ASF/SF2-like pre-mRNA splicing factor SRP31 | 1 | 109 | - | - | |
| Bisa03g1338 | 292 | Gene3D | - | 1 | 109 | IPR012677 | - | |
| Bisa03g1338 | 292 | MobiDBLite | consensus disorder prediction | 206 | 228 | - | - | |
| Bisa03g1338 | 292 | SUPERFAMILY | RNA-binding domain, RBD | 5 | 178 | IPR035979 | GO:0003676 | |
| Bisa03g1338 | 292 | CDD | RRM1_SF2_plant_like | 8 | 79 | - | - | |
| Bisa03g1338 | 292 | MobiDBLite | consensus disorder prediction | 191 | 236 | - | - | |
| Bisa03g1338 | 292 | SMART | rrm1_1 | 111 | 180 | IPR000504 | GO:0003723 | |
| Bisa03g1338 | 292 | SMART | rrm1_1 | 8 | 78 | IPR000504 | GO:0003723 | |
| Bisa03g1338 | 292 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 110 | 188 | IPR000504 | GO:0003723 | |
| Bisa03g1338 | 292 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 112 | 174 | IPR000504 | GO:0003723 | |
| Bisa03g1338 | 292 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 76 | IPR000504 | GO:0003723 | |
| Bisa03g1338 | 292 | MobiDBLite | consensus disorder prediction | 191 | 205 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa03g1338 | Bisa-ChrBisa03 | 18017275 | 18021343 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa03g1338 | 8 | 189 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 25.134 | 6.31e-06 | 45.4 |