Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1331 ATGCTATGCCCAAAGTCACTCTGCATTAGTTTGTCCAGAAGATGTGATGATCTATTTGATGGATTTTCATCAGAAGATGTATCTGCACAAAACCAAGTGAAGGCATCTGTTCAACGAAAAATACGGCAGAGCATTGCAGAAGAGTACCCAGGACTTGAACCAGTCTTAGATGATATACTTCCAAAGAAGTCCCCTTTAATAGTTGTTAAATGTCAGAACCATCTGAATCTGGTTTTAGTGAACAATGTGCCTTTGTTTTTCAGTGTCCGTGATGGACCATACATGCCCACCTTGCGACTCCTCCATCAATATCCAAATATAATGAAGAAATTACAAGTTGACCGTGGTGCAATAAAATTTGTCTTGGCGGGTGCCAACATAATGTGTCCTGGTCTCACATCTCCTGGGGGTGCTCTGGACGAGGAAGTGGAGGCAGAAACCCCTGTGGCAATCATGGCTGAAGGAAAGCAGCATGCTCTTGCTATTGGCTTTACCAAAATGTCAGCAAAAGACATAAAATCAATTAACAAGGGAATTGGGGTCGACAACTTGCATTATCTCAATGATGGTCTTTGGAAGATCTCATGTAGCCTGCTGAATACGCATTTTGTGAGCGCTGACAAATACAAGCTTCGAGCTATATCGCTAGGGAAGGAGACACACATGCCTAGGAGCTTTGTCTGTGATTGCATCACGGCTTACGTTGTGTCAGCAATTGCAACTTTTGCTCATAGATTAGGCAAGGATGTTAATAGTGGATACCCTCGAAGCGTCGTCAAGGCTAATCAGAGCAGAGGGAGCTCGTCTTCACCCAAAGCCGCAGCAATGGGGATCGATCTTAAGGCTGGTGGAAAGAGCAAAAAGACCAAAAGGACCGCGCCTAAGTCTAATGATATCTATCTCAAGCTCTTGGTCAAGCTTTATCGCTTCCTTGTCCGGAGAACTGGTAGCAATTTCAATGCTGTAATTCTCAAGCGCTTGTTCATGAGCAAGATTAACAAGGCACCACTTTCTTTGTCAAGGTTGATAAAATTTACGAAGGGGAAGGAAGATAAGATTGCTGTGATTGTGGGTACTGTGACTGATGATATACGAGTACATGAAGTTCCAGCCTTGAAAGTTACAGCACTCAGGTTTACAGAGACAGCACGAGCCAGAATAGAAAAGGCAGGTGGTGAGTGCTTGACGTTTGATCAGCTTGCTCTGAGGGCCCCTCTGGGACAGAACACGGTCCTTCTTAGGGGTCCAAAGAATGCTCGTGAAGCTGTCAAGCATTTTGGTCCTGCTCCTGGTGTGCCACACAGCCACACCAAGCCTTATGTGCAATCCAAGGGAAGGAAGTTTGAGAGGGCTAGAGGAAGAAGGAACAGCAGAGGATTTAGGGTTTGA 1389 0.4507 MLCPKSLCISLSRRCDDLFDGFSSEDVSAQNQVKASVQRKIRQSIAEEYPGLEPVLDDILPKKSPLIVVKCQNHLNLVLVNNVPLFFSVRDGPYMPTLRLLHQYPNIMKKLQVDRGAIKFVLAGANIMCPGLTSPGGALDEEVEAETPVAIMAEGKQHALAIGFTKMSAKDIKSINKGIGVDNLHYLNDGLWKISCSLLNTHFVSADKYKLRAISLGKETHMPRSFVCDCITAYVVSAIATFAHRLGKDVNSGYPRSVVKANQSRGSSSSPKAAAMGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKINKAPLSLSRLIKFTKGKEDKIAVIVGTVTDDIRVHEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVQSKGRKFERARGRRNSRGFRV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1331 462 Gene3D - 22 203 - -
Bisa03g1331 462 SUPERFAMILY PUA domain-like 108 193 IPR015947 -
Bisa03g1331 462 FunFam Malignant T-cell-amplified sequence 1 18 197 - -
Bisa03g1331 462 Pfam Ribosomal protein 60S L18 and 50S L18e 277 462 IPR021131 -
Bisa03g1331 462 SMART pua_5 109 188 IPR002478 GO:0003723
Bisa03g1331 462 MobiDBLite consensus disorder prediction 443 462 - -
Bisa03g1331 462 Pfam Pre-PUA-like domain 24 105 IPR041366 -
Bisa03g1331 462 CDD MCT1_N 22 96 - -
Bisa03g1331 462 Gene3D - 276 462 - -
Bisa03g1331 462 PANTHER 60S RIBOSOMAL PROTEIN L18 276 462 IPR000039 GO:0003735|GO:0005840|GO:0006412
Bisa03g1331 462 MobiDBLite consensus disorder prediction 448 462 - -
Bisa03g1331 462 Pfam PUA domain 110 187 IPR002478 GO:0003723
Bisa03g1331 462 SUPERFAMILY Ribosomal proteins L15p and L18e 295 414 IPR036227 -
Bisa03g1331 462 ProSiteProfiles PUA domain profile. 108 188 - -
Bisa03g1331 462 NCBIfam uncharacterized domain 2 79 189 IPR004521 GO:0003723
Bisa03g1331 462 CDD PUA_MCTS-1-like 96 192 - -
Bisa03g1331 462 FunFam 60S ribosomal protein L18 276 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1331 Bisa-ChrBisa03 17869120 17875555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1331 278 462 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 79.032 2.07e-100 296