Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1300 ATGAGCCAGTGCTGCCAAAACGCAAAGTCGTCCACCTTATACGAAAAACGCTGTGCGTTTGATTTCAAAGCGGTGGGCGGTGTTGTTAACGAAACTGCCATTCGATTCTATGCCACCAATTCGTTGCTGGATCATCCACCTTACACGTGTACTCTGTGCGCCCTCTCTTTCTTCATCGTGCAGTTAACGGCCTTGATCTGCGGAAACAATATCACGATTCACGCGGACCGTGATAAGCCGGTTGGATGGTATTTTGGTAATTATGCCCGAAACCTGCAAGAGGTCGCAGAGATGCGGACGCCATTTGAACGTTCTCACAAATATACTATGGTAAGGGGAGGAAAGGTTAGTTGCAAACGCAATCTCAGAAAAAGGGTTCGGTCAAAGGAAGGGGGTTCTGATGATTCAGATGAGGACTACGTGATTCCAGATGAAGGTAGAGATGTGTCTGACTGTTCAGAGGATTCTTTGTTTTTGGATGGATGTGCATCCGAGGAGAGTTTTGATAGTTTTGTAGAGGATGAGGAGGATGAGGAAGAGGAAATTAAAGTTGCAAGGAATTTCAATAGATCACAGACTAAAAATGGTATTTGTGGTCGGCGGAAAATTGGCAGTAAAGCCTCACAAAAGAGGGGAAGCGTTGCATATTTACAACAACTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGACAAAGAAGAAGAAGAAGAACAAGAAAAAGAAGAAGAGGAAGAAGAAGAGGAAGAATACAAGGAAGAGGATGCTGATGAGGATTTTGATTGTGATGATGATGAGGAATTTACACCAGAGGAAGAAGATTATTCAGACGAGGAAGACAAAATGAGGGGGAGAAAGAAGAAAAGTAATGGCATAATAGTGCGCAAGAGGGCTGTGCAGAGACGGGCCCCAGTGACTTCTACTAGAGGTCGTAAAAGAAGGAAGAATTCTAGAACTGCAAGGAAACCCTCAAGAAAGAAGAGAAGAAAGAATGGAGGGTTGAGGAGGAAAGTAAGATGTGATGATGAGGGGGATTTTATAGATAATGGCTCAGCCATCAGAACCAAGAGTAAGAAAAAACCAGGCCGAAAAAGGAGAAGACTTCTTGCTGAATCAGATTCATGCTCAGATTGTGTGTCATCTGGGTCATCTGACTTTGAGTATACTATCTCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCTGAGGAATTGTGTGGAAGTTTGCGGACTAATTTGAGGAGTTCATCCCTTCTGACAAAAATTGAAGAGGTTAGAGTCCTTGAAGATCTACATCAGCCAAGAAAGCTTCCTGGCCGGAAGGGTAAGGAAAAGATAGAGGAACATCAAGGGAGAAAGGGTAAGGACAAGGTAGAGGATTTAAAAAGTGAGGTGGGAAAGCAGGTGTGTGGAATTTGTCTATCTGAGGAAGACAAAAGAAGAGTAAGGGGAGTATTAGATTGTTGCACGCACTATTTTTGTTTTGCTTGCATAATGGAGTGGGCAAAGGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTTAAAACAATCAGTAAGCCTGCACGGTCAACAACAGCAGGGGTTGATCTGAGAGGATCAGTGATAGAAGTTCCTGAACGTGATCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCTTATGAGTATGTAATTTGTTCAGAGTGCCATCAAGGTGGAGATGATGACCTCATGTTGCTTTGTGATCTTTGTGACTCACCTGCACATACATATTGTGTTGGTCTGGGTCGGGAAGTACCTGAAGGCAATTGGTATTGTGATGGTTGTAGACCAGTTGCTTCGGGATCTTCAAGTTCTCAAGTTCAAGAAGGTATGGCTGATCCAAGGGTGACAATTCAGAGCCTGCCTGGCAGACGATCACCTGTTGTACATGCACGAGAAAGTATAGACCTCAACTTGATGTCTTCACCCCGTGCATCTTTTACTCAAGGATTTGGGAATGTTCCTTCTAGATTTTCTGGTAGAAGTGTTGAAGGAGCTTCTCCAGTATCTGGAGGAGGGGCACCAACTTTATCAGAGAGACGGTGGATACATCGTCAAATTCAACAATTACTTTCAATGGATAGAATGGCTTCTACAACTGTCAGATCTAATGGCATTTCAGCCACCAATTCAACTAGTAACCTTTATACCTCTCAAATTGATCAAATTAGGGAAACAACCACCCAAGATACAAGGACACAGGATGTGGGATCATCATATCACACATTTTTTGAGGAGAGATTATGCAACAATGCCACTCCATTAATGCAGAATGGGGATCTCTTCTCCATGAGAATAAGCAATTCAAGAAGGCCAGTTATTCAAGATTCAACTCCATTTACCAATAGAGCTGTGAATGGGGCATTGTGGCCTGGACTTGTGGGGACAACCCCAGCCTCAGATTATGAACAAGTCCATCAGCTCAGCAGCAGTTCAAACATTGTTACCGATGGTAGCATGCCCCCTGCCATTAGAGACGACAGTAACTTTCACATTGCAAAGGAACAGCTATCATCAATGGTTAAAGGCCACCTCATGAGCTTGTCACAACATATTGATTTAGGGAACAGTACTATCAAAGATATCACAAGGATTTCTCTAAACACCATACTAGCAGCTTGTGGTCTTGAGCACAAGAAGAGTGAGGTTTGTGCTGTGCCCCCACCATCAGCCTGTCCCCACATTGAACTGGCTGGTGGACAAACGAGTCTGATTAAAGGATGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGATCATGGACACAAGAATGTCACAGTGGTTAAGATTAGGTCTTTAG 2865 0.4342 MSQCCQNAKSSTLYEKRCAFDFKAVGGVVNETAIRFYATNSLLDHPPYTCTLCALSFFIVQLTALICGNNITIHADRDKPVGWYFGNYARNLQEVAEMRTPFERSHKYTMVRGGKVSCKRNLRKRVRSKEGGSDDSDEDYVIPDEGRDVSDCSEDSLFLDGCASEESFDSFVEDEEDEEEEIKVARNFNRSQTKNGICGRRKIGSKASQKRGSVAYLQQLEEEEEEEEEEEEEEEEKDKEEEEEQEKEEEEEEEEEYKEEDADEDFDCDDDEEFTPEEEDYSDEEDKMRGRKKKSNGIIVRKRAVQRRAPVTSTRGRKRRKNSRTARKPSRKKRRKNGGLRRKVRCDDEGDFIDNGSAIRTKSKKKPGRKRRRLLAESDSCSDCVSSGSSDFEYTISEEEREQVREAEELCGSLRTNLRSSSLLTKIEEVRVLEDLHQPRKLPGRKGKEKIEEHQGRKGKDKVEDLKSEVGKQVCGICLSEEDKRRVRGVLDCCTHYFCFACIMEWAKVESRCPLCKQRFKTISKPARSTTAGVDLRGSVIEVPERDQVYQPSEEELRSYIDPYEYVICSECHQGGDDDLMLLCDLCDSPAHTYCVGLGREVPEGNWYCDGCRPVASGSSSSQVQEGMADPRVTIQSLPGRRSPVVHARESIDLNLMSSPRASFTQGFGNVPSRFSGRSVEGASPVSGGGAPTLSERRWIHRQIQQLLSMDRMASTTVRSNGISATNSTSNLYTSQIDQIRETTTQDTRTQDVGSSYHTFFEERLCNNATPLMQNGDLFSMRISNSRRPVIQDSTPFTNRAVNGALWPGLVGTTPASDYEQVHQLSSSSNIVTDGSMPPAIRDDSNFHIAKEQLSSMVKGHLMSLSQHIDLGNSTIKDITRISLNTILAACGLEHKKSEVCAVPPPSACPHIELAGGQTSLIKGCCSSCFDSFVGDVVKRIMDTRMSQWLRLGL 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1300 954 MobiDBLite consensus disorder prediction 209 387 - -
Bisa03g1300 954 MobiDBLite consensus disorder prediction 341 361 - -
Bisa03g1300 954 ProSitePatterns Zinc finger RING-type signature. 494 503 IPR017907 -
Bisa03g1300 954 MobiDBLite consensus disorder prediction 126 152 - -
Bisa03g1300 954 ProSiteProfiles Zinc finger PHD-type profile. 566 615 IPR019787 -
Bisa03g1300 954 SMART ring_2 475 516 IPR001841 -
Bisa03g1300 954 MobiDBLite consensus disorder prediction 219 283 - -
Bisa03g1300 954 Pfam PHD-finger 568 614 IPR019787 -
Bisa03g1300 954 ProSiteProfiles Zinc finger RING-type profile. 475 517 IPR001841 -
Bisa03g1300 954 SMART PHD_3 568 613 IPR001965 -
Bisa03g1300 954 MobiDBLite consensus disorder prediction 441 463 - -
Bisa03g1300 954 MobiDBLite consensus disorder prediction 312 340 - -
Bisa03g1300 954 Pfam Ring finger domain 474 517 IPR001841 -
Bisa03g1300 954 SUPERFAMILY FYVE/PHD zinc finger 538 613 IPR011011 -
Bisa03g1300 954 Coils Coil 210 263 - -
Bisa03g1300 954 Coils Coil 397 417 - -
Bisa03g1300 954 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 535 IPR013083 -
Bisa03g1300 954 PANTHER F18C1.6 PROTEIN 247 945 - -
Bisa03g1300 954 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 556 636 IPR013083 -
Bisa03g1300 954 SUPERFAMILY RING/U-box 474 523 - -
Bisa03g1300 954 CDD RING-HC_Topors 473 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1300 Bisa-ChrBisa03 17464049 17469240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1300 563 612 C2H2 Transcription Factor Family AT3G01460 48.077 7.83e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa03g1300 PHD 6.5e-09 CL0390