Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1271 ATGGAAGAGCTTCATGTCACAGTCAAAAACTTCCTTCCTCTTCCTCCCCTCTCACTCTCTTTTCTTTCATTTATTGTTGCCTTTCCCCAGATCAAGTCGACAGTTGTTGAGGTAGTAATCATGGAGGATGTGTACGGGTTAAAGCCTATGGAAGACGTTGTTAGAGTTGGTGAGGTATCTTCTGCTTCTGAATTGCATCCTGGACCGGTGGTCAATCACTGTTTGCAGCCCCAACCGGCTCAGCTCAAACGATCCGGGTCAGACTCCGACACGTCGGATCAGTTCATCAAGACCCGAATCGCCAATCACCCTCTTTATCCTAATCTCCTCTCTGCTTACATTGAATGCCAAAAGGTTGGAGCTTCACCAGAACTGGCGTCCCTTCTTGATGAAATGGCCCGCGAAAATCACCCCATCACTGCTCGCCCTCTCATAGGGGATGATCCTGAGCTCGACCATTTCATGGAATCATACTGCCAAGTTCTTCGTAGATGCAAAGAGGAATTGTGCAGGCCCTTCAACGAAGCGACTTTGTTTCTGAGCAATATCGAATCACAACTGAGCAACCTTTGCAAAGGAACATTGGCAAAGCCATCGGGATCGGTTTCAGATGAGGCGGGAGTGACTTCAGAGGAGGAATTAAGTTGTGGGGAGGTGGAAGGAGGCGAAGGTCCTGGGTCTTTTGGAACATGTCAGGGTGATCAAGAGATTAAAGGAATGCTTCTTCGAAAGTACAGTGGTTATCTCAGCAATCTCAGAAAGGAGTTCTTGAAGAAAAGGAAAAAGGGTAAACTACCAAAGGATGCAAGGATGGCACTGCTCAACTGGTGGAACGCACACTACAGATGGCCTTATCCTACGGAGGAAGAGAAGCAGAAGCTGGCAGAAATGAGTGGACTGAGTCAAAAGCAGATAAACAATTGGTTTATAAATCAGAGGAAACGGCATTGGAAACCTTCTGAAGACATGAGATTTGCCATCTTGGGAGGTGTGAGTGGTGTAAGCACCTTTGGAGGCCCTCTCTACTTCGATTCGCCACCTCCACCTCAACCTCAACCTCGTTAG 1065 0.4761 MEELHVTVKNFLPLPPLSLSFLSFIVAFPQIKSTVVEVVIMEDVYGLKPMEDVVRVGEVSSASELHPGPVVNHCLQPQPAQLKRSGSDSDTSDQFIKTRIANHPLYPNLLSAYIECQKVGASPELASLLDEMARENHPITARPLIGDDPELDHFMESYCQVLRRCKEELCRPFNEATLFLSNIESQLSNLCKGTLAKPSGSVSDEAGVTSEEELSCGEVEGGEGPGSFGTCQGDQEIKGMLLRKYSGYLSNLRKEFLKKRKKGKLPKDARMALLNWWNAHYRWPYPTEEEKQKLAEMSGLSQKQINNWFINQRKRHWKPSEDMRFAILGGVSGVSTFGGPLYFDSPPPPQPQPR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1271 354 ProSiteProfiles ELK domain profile. 236 256 IPR005539 GO:0003677
Bisa03g1271 354 ProSiteProfiles 'Homeobox' domain profile. 256 319 IPR001356 GO:0003677
Bisa03g1271 354 ProSitePatterns 'Homeobox' domain signature. 294 317 IPR017970 GO:0000981|GO:0006355
Bisa03g1271 354 SMART KNOX1_2 94 138 IPR005540 GO:0003677|GO:0005634
Bisa03g1271 354 SMART KNOX2_2 141 192 IPR005541 GO:0003677|GO:0005634
Bisa03g1271 354 Gene3D - 254 326 - -
Bisa03g1271 354 SMART HOX_1 258 323 IPR001356 GO:0003677
Bisa03g1271 354 Pfam ELK domain 236 257 IPR005539 GO:0003677
Bisa03g1271 354 CDD homeodomain 268 320 IPR001356 GO:0003677
Bisa03g1271 354 SMART ELK_2 236 257 IPR005539 GO:0003677
Bisa03g1271 354 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 89 326 - -
Bisa03g1271 354 SUPERFAMILY Homeodomain-like 258 327 IPR009057 -
Bisa03g1271 354 Pfam KNOX2 domain 145 191 IPR005541 GO:0003677|GO:0005634
Bisa03g1271 354 Pfam KNOX1 domain 96 137 IPR005540 GO:0003677|GO:0005634
Bisa03g1271 354 Pfam Homeobox KN domain 276 315 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1271 Bisa-ChrBisa03 17122130 17126068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1271 9 333 Homeobox Transcription Factor Family AT1G23380 45.921 5.55e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bisa03g1271 KNOX2 1.1e-21 No_clan