Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1204 ATGACTAGATCAAAACTCAGGCTTGAATACATCACTAACAATGCCATGAGAAAAGCCACATTCAAGAAGAGAAGAGGTGGTTTCGTGAAGAAGTTGACAGAGCTTACGACTCTGTGTGGAGTTGAAGCCTGCGCTATTATTTACAGTGCCTACGATTCTCAACCAGACGTGTGGCCCAGCCCATTGGGGGCCCAACACGCAATTTATCGATACAGTGTCGTGCCTGACGTGGTTCAGAAGAAGAAAGCCGTGAGCCACGGGAGCTTCATAAAGCAGAGGACCATGGCGATTAACCAGCGAGTGGAGAAGATGAGGAAGGTGAATACCCAGAAACAAACGGAGTTGTTGGTGTTGGAACATATGTATGGGTTAGAGTACTTACGAAACTTGTCTCAGGGTACTATGAGTGATGTTGCGAAGCAAATTGATAAGAATCTAATGGCCATCAAGAAGAGGATGGAGGAAATGGAGAAGGAGGAGGCAGGAAATGAGCAAGTGTATAGGCCAGAGTTACCACCATCACTTGCTCGTCAAGCTTCAGATTCTGTGAATGATTTGAGCCCAGAAAATGGTGAGAATCAGAACATTTACTTGGGCAGGGAGGAAGAAGGGCTGCACTTAGCATTTGCAGATATTAACCAGGAAGAGAATGCTTTCTGGACTAAGATGTTCCCTTGA 678 0.4572 MTRSKLRLEYITNNAMRKATFKKRRGGFVKKLTELTTLCGVEACAIIYSAYDSQPDVWPSPLGAQHAIYRYSVVPDVVQKKKAVSHGSFIKQRTMAINQRVEKMRKVNTQKQTELLVLEHMYGLEYLRNLSQGTMSDVAKQIDKNLMAIKKRMEEMEKEEAGNEQVYRPELPPSLARQASDSVNDLSPENGENQNIYLGREEEGLHLAFADINQEENAFWTKMFP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1204 225 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bisa03g1204 225 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Bisa03g1204 225 Coils Coil 139 159 - -
Bisa03g1204 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa03g1204 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa03g1204 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa03g1204 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Bisa03g1204 225 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bisa03g1204 225 PANTHER MADS BOX PROTEIN 3 155 - -
Bisa03g1204 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa03g1204 225 Gene3D - 14 120 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1204 Bisa-ChrBisa03 16453938 16454615 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1204 1 146 Type I MADS-box Gene Family AT3G05860 40.411 3.18e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa03g1204 SRF-TF 4.3e-14 No_clan