Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1203 ATGACAAGAAATAAGGTAAATCTTGCATATATCTCCAATGATGCTGCAAGAAAAATAACATTCAAGAAAAGGAAGAAGGGTCTTTCAAAAAAGGTGAGTGAATTAACTACACTCTGTGGGATTGAAGCATGTGCTATTGTTTTCAGTCCTTATGATTCTCAGCCAGAGGTTTGGCCAGATCCAAAAGGAGCCCGACAGGTGATTGCAAGGTATCAGAATTCGCCTACGATGGATGAAAGAAAGAATTTCAACCTAGAGAGCTTTATGGGGCAAAGGATCACCAAAGTTAGCGGCCAGCTCAAGAAGCAGCGTAAGGAGAATAGCGAGAAGGAGATGACACTAGCTATGTTCCGGTGTTTTGAAGGGGAGAGGTTGGACAACATGACAATGGTGGATTTAGACGACATTGACTGCCTGATTGAGAAGAACATAAAGGAAGTTAACAACAAGTTGGAAGACCTTATTTGA 468 0.4145 MTRNKVNLAYISNDAARKITFKKRKKGLSKKVSELTTLCGIEACAIVFSPYDSQPEVWPDPKGARQVIARYQNSPTMDERKNFNLESFMGQRITKVSGQLKKQRKENSEKEMTLAMFRCFEGERLDNMTMVDLDDIDCLIEKNIKEVNNKLEDLI 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1203 155 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa03g1203 155 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa03g1203 155 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa03g1203 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Bisa03g1203 155 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Bisa03g1203 155 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bisa03g1203 155 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Bisa03g1203 155 FunFam Agamous-like MADS-box protein AGL80 13 97 - -
Bisa03g1203 155 PANTHER MADS BOX PROTEIN 3 151 - -
Bisa03g1203 155 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1203 Bisa-ChrBisa03 16405466 16405933 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1203 1 154 Type I MADS-box Gene Family AT5G48670 51.923 4.29e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa03g1203 SRF-TF 3.9e-18 No_clan