Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1199 ATGCCTCTGTATGAGTTATGCCGCCTGACTAAAGCAAAGCTTGATTCTGAAGAGATAAACAGCCGATGTGCACCTGATCAATCTTCCTCACCAGAGAATGACTTTCTCGAGTTGGTCTGGGAAAATGGTCAGATTTCGATGCAAGGTAAGTCAAGTAGAGCAAGAAAGAGCCCAGTATGCAAAAGTCTTCCATCTCACAGTCCCAAGTCTCGAGATAAAGATGCAGGAGTTGGTAGCAATACAAGGATGGGAAAGTTTGGGGTTTTAGACTCTGGATTAAATGAAATTCCAATGTCAGTTCCTTCGGTTGGAGTGGATTTGAGTCAAGAAGAAGACATGATGCCTTGGTTGAATTATACAATGGATGACTCTTTGCAACATGAATATATTTCTGATTTCATGCGCGATCTATCTGGGGTGACCATAAATGAGCTCTCTGCCTCAAATCTAATGGATAAAAGAAGTAACTGCAATCAACAATTTAGGGACTCTTACAAAAATCTTGCGCGTGATGTAAGTTCAGAACAAGTAAACCTTACCAAGGGTTCTTCAGCTGGAGAAATTGAGACTACTAGACCTAAAGGGAATACCAGTCAGTTACACCCAACATCATCGCAGCAATGTCAAACGTCATTTGTGTCTATTAGATCAAAAGTATCAGATATCCATGAAAATAATACCAGTAATGCAATCCAGCAAGCACTTTGTGGGGAAATCACTCAGATTCCATCTACTTCTAGTGGTTTTAGCAGCTTAATTATGCAAAAGCAAGATCCATTATTTCCCAGCAATAGTTCCACCATAATGAATTTCTCCCATTTTGCAAGACCTGCTGCTATTGTGAGAGCTAATCTTCAGAGCATCAGTTTGATGTCTGGTTTGTCTTCAGCAAGATTAGAAAGCATGGGAACTAAGAACAAAGATTTTAATACAGCTAGCAGCAACCGTCCTGAGCCAACACATGTTGATTCAAGTGGCGAAAAGAACTGCCAGCTGGTTATGGATCCATCAAAGGCTGAATTGAAACCGTTGGAACCAAAACCTCTTGAACGGAAAGCTGCTTTTGCAAAACAGTCTGACCCTGACTACAAAGCGGATGATGCCTTTAATAATGGTAAAGTTTCCAATCAAGTTCTCCCTGAAACTGGCACTAAAGGACAGCCAGATGTTGAAAAAGTCATGCACCCTGTAGTAGCCTCTTCTTCCGTTTGCTCTGGCAATGGTATGAAGAGAGGTTCAGATTACCCAAATCAAAATTTGAAGCGAAAAAATCGAGATACTGATGACTCTGAATCCCACAGTGAAGAAGTTGAGGAAGAATCAGCGGGTATTAAAAAGGCAGCTCCTGCACGAGGTACCGGTTCCAAAAGAAGCCGTGCAGCTGAAGTGCATAATCTATCTGAAAGGAGACGAAGAGACAGGATCAATGAGAAGATGCGTGCATTACAAGAACTCATACCAAATTGCAATAAGGTGGATAAAGCCTCAATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCGGGCTTATATGTGCCTCCAATGATGTTACACCCTGGAATGCAGCAAATGCACACACCACATATGGCTCCATTCTCTCCTATGGGAGTCGGCATGCAAATGGGGTTAGGAATGGGTTATGGGATGAATATCTCTGACATGAATAGTGGATCATCTAGATTCCCAACGGTTCAGGTGCCCCAAATGCAAGGAACTCAATTTCCTGTTTTACCTATGTCTGGACCCACTGCTTTTCATGGGATGGGAAGATCAAATCCTCAAGTGTATGGGTTTCCAGGTCAGGGACCTCCTAAGTCGATGCCACATGCTCCTGTAGTTTCTATGTCAGGAGGGCCTCTTATGAACCCATCAACTCCGGGATTAAATGCCTGCGGAGTTTCAGGGCTTGTGGGAACTGTGGATTCAGCTTCAGCCTCTGGCTTAAAGGATCCAATGCCAAATGTGAACTCAAAAGTTATGCCAAGCACGGGTGGTAGTAACCCCACAAGTCAGGTGTCTACTCAGTGTGAAGCAACAAATGTTGGATTTGATCAGTCAGCATTGGTGCATAGTAGCGGGCATGCCTCTAATGCTAAATCTAATGACGGTGGAGCTGCTAATCCTGGCAAATAA 2166 0.4303 MPLYELCRLTKAKLDSEEINSRCAPDQSSSPENDFLELVWENGQISMQGKSSRARKSPVCKSLPSHSPKSRDKDAGVGSNTRMGKFGVLDSGLNEIPMSVPSVGVDLSQEEDMMPWLNYTMDDSLQHEYISDFMRDLSGVTINELSASNLMDKRSNCNQQFRDSYKNLARDVSSEQVNLTKGSSAGEIETTRPKGNTSQLHPTSSQQCQTSFVSIRSKVSDIHENNTSNAIQQALCGEITQIPSTSSGFSSLIMQKQDPLFPSNSSTIMNFSHFARPAAIVRANLQSISLMSGLSSARLESMGTKNKDFNTASSNRPEPTHVDSSGEKNCQLVMDPSKAELKPLEPKPLERKAAFAKQSDPDYKADDAFNNGKVSNQVLPETGTKGQPDVEKVMHPVVASSSVCSGNGMKRGSDYPNQNLKRKNRDTDDSESHSEEVEEESAGIKKAAPARGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYVPPMMLHPGMQQMHTPHMAPFSPMGVGMQMGLGMGYGMNISDMNSGSSRFPTVQVPQMQGTQFPVLPMSGPTAFHGMGRSNPQVYGFPGQGPPKSMPHAPVVSMSGGPLMNPSTPGLNACGVSGLVGTVDSASASGLKDPMPNVNSKVMPSTGGSNPTSQVSTQCEATNVGFDQSALVHSSGHASNAKSNDGGAANPGK 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1199 721 CDD bHLH_AtPIF_like 459 521 IPR047265 -
Bisa03g1199 721 MobiDBLite consensus disorder prediction 694 721 - -
Bisa03g1199 721 MobiDBLite consensus disorder prediction 416 445 - -
Bisa03g1199 721 FunFam Basic helix-loop-helix transcription factor 454 517 - -
Bisa03g1199 721 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 459 508 IPR011598 GO:0046983
Bisa03g1199 721 Gene3D - 454 517 IPR036638 GO:0046983
Bisa03g1199 721 MobiDBLite consensus disorder prediction 47 81 - -
Bisa03g1199 721 MobiDBLite consensus disorder prediction 358 474 - -
Bisa03g1199 721 MobiDBLite consensus disorder prediction 178 205 - -
Bisa03g1199 721 MobiDBLite consensus disorder prediction 400 414 - -
Bisa03g1199 721 MobiDBLite consensus disorder prediction 457 474 - -
Bisa03g1199 721 PANTHER TRANSCRIPTION FACTOR PIF3 1 684 IPR044273 GO:0003700|GO:0006355
Bisa03g1199 721 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 456 519 IPR036638 GO:0046983
Bisa03g1199 721 SMART finulus 465 514 IPR011598 GO:0046983
Bisa03g1199 721 Pfam Helix-loop-helix DNA-binding domain 463 509 IPR011598 GO:0046983
Bisa03g1199 721 MobiDBLite consensus disorder prediction 694 714 - -
Bisa03g1199 721 MobiDBLite consensus disorder prediction 305 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1199 Bisa-ChrBisa03 16324624 16331584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1199 1 587 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 38.079 1.24e-78 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa03g1199 HLH 7.9e-14 No_clan