Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1189 ATGGCAGTATGCAACTCAAGTCATGATTCTTTTGGCAGCTCCGCAAAATATGTCATGATCTGGAAAGGACCTGAAGTCACCTGGGATATTCATCGACTATTCCCACTTTCCCAGGCAAAGCTTCCAGTAGCATTCCAGCCGTTCGTTTCCTCCCCATCCAACCGGGCAGCGCGCACTACGTCATCTCTATTTCAGCTCCAGCATTCAGCATCAAAACGCACCAGCGTTCGATAACAAAGATCAATATACTTGGTTTCAATGGAAGGAGACGCAGTTACTTTCTCTAAAGCTTCAGGAGGCCAAGATGTCTCAAACCCCCAACAGATGTCCTGTTTTGCTGCTGTAGCACGGGGTCCTGCCCTTAAAAAGATGGATGTGACGAAAGCAACTACTACATGCTGCTTTGAGTTACTTCCTAACTCGTTAGTGCTGGCATTGGAGGGGCTCCTTCCCACACAAGCAGACAAGCGCCGGGAACGAGATTCAGCTTGCTCTTCTTATGAGATGGATGCTGGCTATGGTGCGATTCAGGTGAAAATGTCTTCCTCACGACCTAGTCAGTCATCCAGTAATTCAGGAAGATCAAGGCACAGTGCTAGAGTTATTGCTCAGACCACTGTAGACGCAAAACTCCATGCAAATTTTGAGGAGTCCGGCAGCTCCTTTGATTACTCAAGTTCAGTGCGTGTCTCTGGTACAGTCAATGGAGAGTATCAACCAAGGTCTGATAGGGTAACAACAGCTTATCTCCATCAAATACAGAAAGGCAAGCTGATTCAGCCTTTCGGGTGCTTGCTGGCCTTAGATGAGAAAACATGCAAGGTCATTGCATACAGTGAGAATGCTCCCGAAATGTTGACCATGGTTAGTCATGCTGTCCCTAGTGTGGGTGACCACCCTGCACTTGGCATTGGCACAGACATAAGAACTATTTTCACTGCCCCAAGTGCTTCTGCATTGCAGAAGGCATTAGGATTTGGGGAAGTTTCACTTCTCAACCCCATTCTAGTGCATTGCAAGACCTCTGGGAAGCCCTTTTATGCAATTATCCATCGTGTGACTGGAAGTTTGATCGTTGACTTTGAGCCAGTCAAACCTTATGAAGTTCCTATGACTGCAGCTGGTGCCCTTCAATCTTACAAGCTTGCAGCCAAAGCAATCACCAGATTGCAATCTTTGCCTAGTGGGAGCATGGAAAGGCTATGTGATATAATGGTTCAAGAGGTCTTCGAACTCACAGGTTATGACAGAGTGATGGCTTATAAATTTCATGAAGATGATCATGGGGAAGTAATTGCTGAGATGACAAAGCCAGGTTTAGAGCCATATCTGGGTTTGCATTACCCAGCCACTGATATTCCACAGGCTGCACGCTTTTTATTTATGAAGAACAAGGTTCGTATGATAGTTGACTGTCGTGCGAGACATGTGAAGGTGCTTCAAGATGAAAAACTTCCATCTGAGTTAACCTTGTGTGGTTCAACCTTGAGGGCTCCTCATAGTTGCCATTTGCAATATATGGAGAACATGGATTCAATTGCTTCCCTGGTTATGGCTGTTGTGGTCAATGACAGCGATGAAGATGGGGACAGCTCTGATTCTGTCCAGCCACAGAAGAAAAAGAGACTTTGGGGTTTAGTAGTTTGCCATAACACTACACCCAGGTTTGTTCCATTTCCTCTTAGGTATGCATGTGAATTTCTGGCTCAAGTATTTGCCATCCATGTGAACAAAGAAATAGAGTTAGAATATCAGATTATTGAGAAAAACATCCTGCGTACCCAGACACTCTTGTGTGATATGCTGATGCGAGATGCGCCGCTAGGTATTGTATCACAGAGCCCAAATATAATGGATCTTGTGAAATGTGATGGGGCTGCCCTCTTGTATAAAAACAAGGTATGGAGATTGGGAGTAACACCAAGTGAATCTCTGATACGAGAGATAGCTATATGGCTCTTTGAGAACCATATGGATTCCACAGGTTTGAGTACAGATAGCTTGTCTGATGCAGGATTCCCTGGGGCTCATGCTCTTGGAGATGTAGTATGTGGAATGGCAGCCGTGAGAATATCTTCCAAAGACATGGTTTTCTGGTTTCGGTCACATACTGCTGCAGAAATCAGATGGGGTGGTGCTAAGCATGAACCTGGTGAACAGGATGATGGTAGGAGGATGCATCCAAGATCATCGTTCAAAGCTTTCCTTGAAGTTGTGAAGTCAAGAAGCTTACCATGGAAGGATTACGAAATGGACGCTATCCATTCATTACAGTTAATCCTGAGAAATGCGTTCAAAGATACAGAGAGTATGGATATACACACCAATGCAATTAACACAAGATTAAGCGATTTGAAAATTGAAGGGATGCAAGAACTGGAAGCGGTGACAAGTGAGATGGTTCGGTTAATTGAAACAGCAACAGTGCCAATTTTGGCAGTTGATGTTGATGGGCTGGTCAATGGGTGGAATACAAAAATTTCTCAGTTGACAGGTCTTCCAGTTGATGAAGCAATTGGAAAGCATTTACTCACACTCGTTGAGGATTCTTCAACTGATAGGGTCAAGAAGATGCTGGACATGGCACTGCAAGGTCAAGAAGAGCAGAATGTCCAATTTGAAATCAAAACACATGCGTCTAAGATTGATTCTGGTCCCATCAGCTTGGTTGTTAATGCATGTGCAAGCAGAGACCTTAGAGATAATGTGGTGGGGGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACAGTCATGGACAAATTCACCCGAATCGAAGGTGATTACAAGGCAATTGTCCAGAACCCAAATCCATTGATCCCCCCAATATTTGGTACAGATGAATTTGGCTGGTGTTGTGAGTGGAATTCAGCAATGACCAAGTTAACTGGATGGAAGCGAGAGGAGGTGATGGACAAAATGCTCTTAGGGGAGGTCTTTGGGACCCATATGGCTTGTTGTCGTCTAAAGAATCAAGAAGCTTTTGTTAACTTTGGCATTATACTTAATAAAGCCATGACTGGTTCAGAAACTGAGAAGGTTGCTTTCGGCTTCTTTTCTCGGAATGGAAAGTATGTAGAATGCCTGCTTTCTGTGAGTAAAAAGCTGGACACAGAAGGTGCAGTTACAGGGATCTTCTGCTTCTTGCAGCTAGCTAGCCTGGAGTTGCAGCAGGCATTGCATATTCAGCGCCTGTCTGAGCAAACTGCTTTTAAGAGACTGAAAGCTTTAACTTACATGAGAAGGCAGATACGTAATCCTTTATGTGGGATCGTGTTCTCCCGGAAAATGTTGGAGGGCACTGAGTTGGGAACTGAACAAAAACAACTTTTGCACACTAATGCCCAGTGCCAACGCCAGCTCAGCAAAATTCTTGATGATTCTGACCTTGATAGTATCATTGATGGGTATTTAGATCTGGAGATGGTTGAATTTACTCTGCATGAGGTACTGGTTGCCTCCCTCAGTCAAGTACTGACAAAGAGCAATGCAAAGGGTGTCCGAATAGTGAATGAGGTCGCAGAGCACATTGAGACTGAAACCTTATATGGTGACAGTCTTAGGCTTCAACAGGTCTTGGCTGACTTCTTATTGATATCCATCACTTTTACACCGCCTGGAGGTAAGATAATTGTAGCAGCCTCTTTAGCCAAAGATCAGTTAGGAAAATCTGTCCATCTTGCCAATTTGGAGCTCAGCATAACACATGCTGGAAGTGGGATTCCAGAAGCATTGCTGAACCAGATGTTTGGAAGCGATGGACAAGAATCTGAGGAAGGTATTAGCCTGCTCATCAGTAGAAAGCTGCTAAAGCTGATGAATGGAGATGTGCGTTATGTGAGGGAAGCAGGCAAATCATCCTTCATTTTAACTGTTGAACTCGCTGCGGCCCATAAGTCCAGGGCATAA 3912 0.4448 MAVCNSSHDSFGSSAKYVMIWKGPEVTWDIHRLFPLSQAKLPVAFQPFVSSPSNRAARTTSSLFQLQHSASKRTSVRXQRSIYLVSMEGDAVTFSKASGGQDVSNPQQMSCFAAVARGPALKKMDVTKATTTCCFELLPNSLVLALEGLLPTQADKRRERDSACSSYEMDAGYGAIQVKMSSSRPSQSSSNSGRSRHSARVIAQTTVDAKLHANFEESGSSFDYSSSVRVSGTVNGEYQPRSDRVTTAYLHQIQKGKLIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSASALQKALGFGEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIVDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDIMVQEVFELTGYDRVMAYKFHEDDHGEVIAEMTKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCRARHVKVLQDEKLPSELTLCGSTLRAPHSCHLQYMENMDSIASLVMAVVVNDSDEDGDSSDSVQPQKKKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELEYQIIEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKVWRLGVTPSESLIREIAIWLFENHMDSTGLSTDSLSDAGFPGAHALGDVVCGMAAVRISSKDMVFWFRSHTAAEIRWGGAKHEPGEQDDGRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKDTESMDIHTNAINTRLSDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNTKISQLTGLPVDEAIGKHLLTLVEDSSTDRVKKMLDMALQGQEEQNVQFEIKTHASKIDSGPISLVVNACASRDLRDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNSAMTKLTGWKREEVMDKMLLGEVFGTHMACCRLKNQEAFVNFGIILNKAMTGSETEKVAFGFFSRNGKYVECLLSVSKKLDTEGAVTGIFCFLQLASLELQQALHIQRLSEQTAFKRLKALTYMRRQIRNPLCGIVFSRKMLEGTELGTEQKQLLHTNAQCQRQLSKILDDSDLDSIIDGYLDLEMVEFTLHEVLVASLSQVLTKSNAKGVRIVNEVAEHIETETLYGDSLRLQQVLADFLLISITFTPPGGKIIVAASLAKDQLGKSVHLANLELSITHAGSGIPEALLNQMFGSDGQESEEGISLLISRKLLKLMNGDVRYVREAGKSSFILTVELAAAHKSRA 1303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1189 1303 Gene3D PAS domain 942 1054 - -
Bisa03g1189 1303 ProSitePatterns Phytochrome chromophore attachment site signature. 497 506 IPR013516 -
Bisa03g1189 1303 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1185 1295 IPR003594 -
Bisa03g1189 1303 SUPERFAMILY PYP-like sensor domain (PAS domain) 802 909 IPR035965 -
Bisa03g1189 1303 SMART HKATPase_4 1185 1297 IPR003594 -
Bisa03g1189 1303 ProSiteProfiles PAC domain profile. 869 925 IPR000700 -
Bisa03g1189 1303 MobiDBLite consensus disorder prediction 178 200 - -
Bisa03g1189 1303 FunFam Phytochrome 792 923 - -
Bisa03g1189 1303 ProSiteProfiles PAS repeat profile. 796 866 IPR000014 -
Bisa03g1189 1303 SUPERFAMILY PYP-like sensor domain (PAS domain) 253 365 IPR035965 -
Bisa03g1189 1303 NCBIfam PAS domain S-box protein 803 919 IPR000014 -
Bisa03g1189 1303 Pfam PAS fold 929 1051 IPR013767 GO:0006355
Bisa03g1189 1303 Pfam PAS fold 799 913 IPR013767 GO:0006355
Bisa03g1189 1303 ProSiteProfiles PAS repeat profile. 929 981 IPR000014 -
Bisa03g1189 1303 FunFam Phytochrome 585 716 - -
Bisa03g1189 1303 Pfam Phytochrome region 593 768 IPR013515 GO:0006355|GO:0009584
Bisa03g1189 1303 Gene3D PAS domain 790 927 - -
Bisa03g1189 1303 Gene3D PAS domain 252 500 - -
Bisa03g1189 1303 Gene3D - 585 758 IPR043150 -
Bisa03g1189 1303 SUPERFAMILY PYP-like sensor domain (PAS domain) 943 1049 IPR035965 -
Bisa03g1189 1303 PANTHER TWO-COMPONENT HISTIDINE KINASE 1027 1286 - -
Bisa03g1189 1303 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1135 1292 IPR036890 -
Bisa03g1189 1303 CDD PAS 940 1051 IPR000014 -
Bisa03g1189 1303 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 397 570 IPR016132 -
Bisa03g1189 1303 Pfam PAS fold 248 364 IPR013654 GO:0006355
Bisa03g1189 1303 SMART gaf_1 397 590 IPR003018 GO:0005515
Bisa03g1189 1303 ProSiteProfiles Histidine kinase domain profile. 1080 1299 IPR005467 -
Bisa03g1189 1303 SMART HisKA_10 1073 1138 IPR003661 GO:0000155|GO:0007165
Bisa03g1189 1303 PRINTS Phytochrome signature 728 746 IPR001294 GO:0006355|GO:0009584
Bisa03g1189 1303 PRINTS Phytochrome signature 610 630 IPR001294 GO:0006355|GO:0009584
Bisa03g1189 1303 PRINTS Phytochrome signature 312 334 IPR001294 GO:0006355|GO:0009584
Bisa03g1189 1303 PRINTS Phytochrome signature 695 714 IPR001294 GO:0006355|GO:0009584
Bisa03g1189 1303 PRINTS Phytochrome signature 818 833 IPR001294 GO:0006355|GO:0009584
Bisa03g1189 1303 PRINTS Phytochrome signature 799 815 IPR001294 GO:0006355|GO:0009584
Bisa03g1189 1303 PRINTS Phytochrome signature 891 908 IPR001294 GO:0006355|GO:0009584
Bisa03g1189 1303 PRINTS Phytochrome signature 412 431 IPR001294 GO:0006355|GO:0009584
Bisa03g1189 1303 PRINTS Phytochrome signature 497 518 IPR001294 GO:0006355|GO:0009584
Bisa03g1189 1303 PRINTS Phytochrome signature 911 931 IPR001294 GO:0006355|GO:0009584
Bisa03g1189 1303 SUPERFAMILY GAF domain-like 588 766 - -
Bisa03g1189 1303 SMART pas_2 798 864 IPR000014 -
Bisa03g1189 1303 SMART pas_2 928 997 IPR000014 -
Bisa03g1189 1303 Pfam GAF domain 397 580 IPR003018 GO:0005515
Bisa03g1189 1303 CDD PAS 807 913 IPR000014 -
Bisa03g1189 1303 Gene3D - 1136 1301 IPR036890 -
Bisa03g1189 1303 SUPERFAMILY GAF domain-like 377 577 - -
Bisa03g1189 1303 MobiDBLite consensus disorder prediction 179 200 - -
Bisa03g1189 1303 Gene3D - 378 741 IPR029016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1189 Bisa-ChrBisa03 16184021 16195407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1189 180 1300 Histidine Kinase Gene Family AT1G09570 80.749 0.0 1914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g1189 03 16184021 16195407 Bisa03g1189 03 16184021 16195407 ECH