Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1171 ATGGAAAAGGTAGCAGTTCTGAGTGTTGCAATATTAATGGTGGTGGGGTTATCCTCCACAAAACTCGCATCTGCTGCAGAATGGCTCAAAGCTCATGCAACCTTCTATGGTGGAAGTGACGCCTCTGGAACAATGGGGGGGGCATGTGGTTATGGAAATCTGTACACAGATGGATATGGCACAAAAACAGCGGCTTTGAGTACTGCTCTCTTCAACGATGGGAAGGCCTGTGGTGGCTGCTATCAGATTGTGTGCGACGCAACGCAGGCGCCACAGTGGTGCCTCGCAGGCCACATCACTATCACTGCTACTAACTTCTGTCCCCCAAACTACGCTCTTCCCAGCGACAATGGCGGATGGTGCAATCCCCCAAGGCCTCATTTTGACATGTCTCAGCCTGCCTTTCTCACCATTGCCAAGTACAAGGCCGGTATTGTTCCCATTTTCTACAGAAAGGTTGGGTGCAGGAGAACTGGAGGAATCAGGTTCACCATTAATGGAAGAGACTATTTTGAGCTAGTGCTTATAAGCAACGTAGGAGGAGCAGGAGAAATCTCTCGAGTTTGGATCAAAGGGTCCAGAATGAGTAACTGGGAATCAATGTCAAGGAACTGGGGAACCAACTGGCAGAGCCTCAGCTATCTCAACGGTCAGAGCCTGTCCTTCAGAGTCCAACTCACAAATGGAAACACTCGCACTGCCTATAATGTGGTTCCCTCCAACTGGAGCTTTGGACAGTCCTTCCGTAGCAATGTTCAGTTCTGA 765 0.4967 MEKVAVLSVAILMVVGLSSTKLASAAEWLKAHATFYGGSDASGTMGGACGYGNLYTDGYGTKTAALSTALFNDGKACGGCYQIVCDATQAPQWCLAGHITITATNFCPPNYALPSDNGGWCNPPRPHFDMSQPAFLTIAKYKAGIVPIFYRKVGCRRTGGIRFTINGRDYFELVLISNVGGAGEISRVWIKGSRMSNWESMSRNWGTNWQSLSYLNGQSLSFRVQLTNGNTRTAYNVVPSNWSFGQSFRSNVQF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1171 254 SMART dpbb_1 63 150 IPR007112 -
Bisa03g1171 254 SUPERFAMILY PHL pollen allergen 157 250 IPR036749 -
Bisa03g1171 254 FunFam Expansin 160 254 - -
Bisa03g1171 254 Gene3D - 160 254 IPR036749 -
Bisa03g1171 254 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Bisa03g1171 254 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Bisa03g1171 254 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Bisa03g1171 254 PRINTS Expansin signature 87 98 IPR002963 GO:0009664
Bisa03g1171 254 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Bisa03g1171 254 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Bisa03g1171 254 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Bisa03g1171 254 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Bisa03g1171 254 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Bisa03g1171 254 PANTHER EXPANSIN-A15 10 250 IPR002963 GO:0009664
Bisa03g1171 254 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Bisa03g1171 254 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Bisa03g1171 254 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Bisa03g1171 254 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Bisa03g1171 254 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Bisa03g1171 254 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Bisa03g1171 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 250 IPR007117 -
Bisa03g1171 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 160 IPR007112 -
Bisa03g1171 254 Pfam Lytic transglycolase 63 150 IPR009009 -
Bisa03g1171 254 Gene3D - 13 156 IPR036908 -
Bisa03g1171 254 CDD DPBB_EXPA_N 27 155 - -
Bisa03g1171 254 FunFam Expansin 17 156 - -
Bisa03g1171 254 SUPERFAMILY Barwin-like endoglucanases 20 178 IPR036908 -
Bisa03g1171 254 Pfam Expansin C-terminal domain 161 239 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1171 Bisa-ChrBisa03 15974549 15976109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1171 1 254 Expansin Gene Family AT4G01630 75.294 6.35e-147 409