Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1162 ATGGGGAGGCACTCTTGCTGCTACAAGCAGAAGCTTCGCAAGGGTCTATGGTCCCCCGAAGAGGATGAGAAACTCTTGAGGTATATTACTAAGTATGGCCATGGCTGCTGGAGCTCTGTTCCTAAGCAAGCAGGCTTGCAGAGATGTGGAAAGAGCTGCAGGCTAAGGTGGATCAACTACCTAAGGCCTGATTTGAAGAGAGGCACATTCTCACAAGAAGAAGAGAATCTCATTATTGAGCTTCATGCAGTTTTAGGGAATAGATGGTCCCAAATTGCAGCACAGCTGCCAGGGAGAACGGACAATGAAATAAAGAATCTCTGGAATTCATGCTTAAAGAAGAAGCTGAGGCAAAGAGGGATAGACCCTGTCACCCATAAACCACTGTCTGAGGTTGAGAATGGAGAGGACAAAGATAGAGAGAAAGTGGCAGCGGTGGTGAATTCCAATGAATTGAACCTCCTCAAATCAGAAAGCTCCAAGTCTGATGGAGCTTCTTCCTATGAGCACAAACCATGTTCAATTCCCACCAAAGCCTACGCACCAGACATGGAAGGTTCTTCTTCCACCTCCAAGATTAACACCGATTGTTCAAGCAAAGACTTCTTCCTAGACAGGTTCGTCAGCAGCCACCAGGAAAGCTACACACCCACTTCAGATTTGATGGGAAATTTTCCCCTTCACATGTATAATAATCCATCCACTGATTCTTCTCGATGGTTCAGCCAAACTGCAGGAAGACCGCTTGATATTAACTCTGAATTTACTTCCAATGCCATGTCCACTATCTTTCCACTTTCAACCACCTCATTCCCCTCAACTTCAATCTGCTACAAACCATCTCTCACACTTCCCTCTGACGACATCTGTACGGCCTCTTTCACACAAGTGAATGGATCTCATTACTGGGAAGCCGCTGCCTCCAACCAAAGCAATAGAAACAGCCCTCTAAACTTTCAGAACAGTATCCTTCCTTGGGGATTGACAGATTGTGGGGGTGCTGCTAAAGAGCCTCATCAAATTCATATGATGGAGAGCCACACAGAAGAAGCAAAGTGGACCGAGTACCTTCATAATAACTCAATCTTAATGCTGGCTGCTCTACAGAATCAAACTCCAGAATCCTTGTGCAACGAGATAAAGCCTGCCACGCATTTGGTCCCTGATACTTTAGGAGCTAATTTGCCTCACAGCAGGCAGCAAGACCAACCATCACAAACTTCTAATATATTTTCCAAGGACATCCAGAAGCTCACAGCAGCTTTTGGACATATATAG 1278 0.4546 MGRHSCCYKQKLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEDKDREKVAAVVNSNELNLLKSESSKSDGASSYEHKPCSIPTKAYAPDMEGSSSTSKINTDCSSKDFFLDRFVSSHQESYTPTSDLMGNFPLHMYNNPSTDSSRWFSQTAGRPLDINSEFTSNAMSTIFPLSTTSFPSTSICYKPSLTLPSDDICTASFTQVNGSHYWEAAASNQSNRNSPLNFQNSILPWGLTDCGGAAKEPHQIHMMESHTEEAKWTEYLHNNSILMLAALQNQTPESLCNEIKPATHLVPDTLGANLPHSRQQDQPSQTSNIFSKDIQKLTAAFGHI 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1162 425 FunFam Myb transcription factor 11 67 - -
Bisa03g1162 425 CDD SANT 17 61 IPR001005 -
Bisa03g1162 425 SMART sant 13 63 IPR001005 -
Bisa03g1162 425 SMART sant 66 114 IPR001005 -
Bisa03g1162 425 MobiDBLite consensus disorder prediction 155 192 - -
Bisa03g1162 425 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Bisa03g1162 425 Gene3D - 68 144 - -
Bisa03g1162 425 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bisa03g1162 425 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Bisa03g1162 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Bisa03g1162 425 PANTHER MYB DOMAIN PROTEIN 55 1 340 - -
Bisa03g1162 425 Gene3D - 11 67 - -
Bisa03g1162 425 FunFam MYB transcription factor 68 140 - -
Bisa03g1162 425 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bisa03g1162 425 CDD SANT 69 109 IPR001005 -
Bisa03g1162 425 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Bisa03g1162 425 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1162 Bisa-ChrBisa03 15846538 15847990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1162 1 424 MYB Transcription Factor Family AT1G09540 43.953 1.13e-98 297
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa03g1162 Myb_DNA-binding 4.9e-15 CL0123