Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa03g1145 | ATGGCTAACCCAACACAACCAGATGTTGGGCCTTCCCTCACAATCATTTCTCCAAACCCAGACAGACAGAGTCCTTATCCTGAGAAAAGTCCAATTCACCTTCCTCCTTCAATTTTTGCAGCAGCGCCTAGATTTCCTCCGCCAAAACTACAACAAGATCAAGCTTCTTCACCTTCCATGAGAACCCCAAACGTTTTATCACCAGCCAATGGTGTTAGAACTGGCAGTCCTGTTCCTCATTTGAGTACTCCTCCTGGACCTCCTGTTTTTACCTCACCCGTCCGTCCAGCTGCTGTTCCTTTTCGCACATCACCTGCATCACCTCAGCCTGTTGCTTTGTCTTCGAATTCATCTTTACCAACAACATCACCACCCCAGTTTCCAAATGGATCTGTTGAGTTGCAGCACCAAGCTTCTGATGTTAGTGATGATCAAGTTTATATTGGGGAATCTTCGTTCGTCCTTTTCTCAGCTCATAAGGTTTTGAAGCAGAAGAAGCTAGCAAATGTACCCAGTTTGGGTTTTGGGGCATTGGTCTCACCTGGGAAGGAGATTCCAACTGGCCCTCAAGTGATACAGCGTGATCCCCATCGATGCCAAAGCTGTGGAGCTTATGCAAACATCTATTGCAACATATTGCTTGGATCAGGCCAGTGGCAGTGTGTTATATGTCGGAAACTGAATGGAAGTGATGGCGAGTACATTGCTCCCAGCAAAGAAGATCTTTGCAGATTTCCAGAACTGTCATCACCCATGGTTGATTATGTTCAAACTGGGAACAAGAGACCTGGTTTTGTTCCAGTTTCAGATTCAAGAATGTCTGCACCAATTGTTCTTGTAATAGATGAATGTTTAGATGAACCTCACCTACACCATCTACAGAGCTCATTGCATGCTTTTGTTGATTCTCTTCCCCCTACAACACGAATAGGGATTGTACTATATGGTCGTACGGTATCAGTTTATGACTTCTCAGAGGAGTCAGTTGCATCTGCTGATGTACTTCCCGGGGACAAATCACCAACTCAAGAATCCTTGAAGGCTTTGATTTATGGCACTGGTATATATTTGTCACCAATGCATGCTTCTCTTCCTGTAGCACATGCCATATTTTCATCATTGAGGCCATACAAGTTGAACATGCCGGAAGCTTCGAGAGATCGGTGTCTAGGTACTGCTGTTGAGGTTGCTCTTGCTATAATTCAAGGACCTTCTGCAGAACTGTCCCGAGGGGTAGTCAAAAGGTCAGGGGGTAATAGCAGAATAATTGTCTGTGCTGGTGGGCCCAACACTTATGGCCCTGGATCTGTTCCTCATTCTTATAGTCACCCTAATTATCCTCATATGGAGAAGACAGCATTGAAAAGGATGGAGAATCTAGGTCGTGAGGCTCATCGCTACAATACTGTCGTTGATATTTTATGTGCTGGAACGTGCCCTGTCAGAGTTCCTATTTTGCAGCCTCTTGCAAAAGCATCAGGTGGTGTTTTGGTTCTCCATGATGACTTCGGGGAAGCCTTTGGCGTTAATTTGCAAAGGGCATCTGCCAGAGCAGCAGGTTCTCATGGTTTGTTGGAAGTACGCACGTCAGGTGATATTCTTATTACTCAAGTTGTGGGTCCTGGTGAAGAGGCGCATGTGGACACCCATGAATCCTTTAAAAATGATACTGCTCTTTATATTCAAATGTTGAGTGTTGAAGAAACTCAGAGCTTCTCTCTCTCCATGGAAAGCAAAGGCGATATCAAAAGTGATAGTGTATTTTTCCAGTTTGTGATGCAGTACTCAAATGTGTTTCAAGCTGATGTATCAAGGATAATTACTGTTAGACTGTCAACTGTAGATAGTATCTCAGAATATCTTGAGAGTGTTCAAGATGAAGTGGCAACTGTCCTCATTGCAAAAAGGACTTTGTTACGAGCCAAAAACTATTCTAATGCAATTGACATGCGAGATACAGTAGATGAAAGAATCATCGATGTTGCTATGAAATTTGGTTCCCAACTACCCAAGTCAAAGTTCTACCGATTCCCAAAGGAGTTATCCCTATTACCTGAGCTCCTTTTCCATCTCAAAAGGGGGCCGCTATTGGGAAGCATTATTGGTCATGAAGACGAAAGGTCTGTGCTGCGGAGCCTGTTTCTAAATGCATCCTTTGATCTATCACTGCGAATGGTTGCTCCTCGCTGCTTAATGCACAGGGAGGGGGGAACGTTTGAGGAACTGCCAGCTCATGATCTTGCTATGCAATCCGATGCTGCTGTTGTTCTTGACCATGGCACGGATGTCTTCATTTGGTTGGGTGCTGAACTTGCAGCTGATGAAGGAAGAAGTGCTGCTGCTTTAGCTGCTTGCCGGACTTTGGCCGAGGAACTTACTGAATTGCGATTTCCAGCTCCTCGTATCCTTGCATTTAAGGAGGGTAGCTCACAGGCCAGATATTTTGTTTCTCGACTCATACCAGCACACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTCCCACAGCTTAGGTCATTAACACCAGAGCAGCGGACTAAACTAAAAAGCAGTTTTATTCACTTTGATGATCCTAGTTTCTGCGAGTGGATGAAAAGTCTGAAAGTGGTACCTCCAGAACTCACCTGA | 2628 | 0.4475 | MANPTQPDVGPSLTIISPNPDRQSPYPEKSPIHLPPSIFAAAPRFPPPKLQQDQASSPSMRTPNVLSPANGVRTGSPVPHLSTPPGPPVFTSPVRPAAVPFRTSPASPQPVALSSNSSLPTTSPPQFPNGSVELQHQASDVSDDQVYIGESSFVLFSAHKVLKQKKLANVPSLGFGALVSPGKEIPTGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSDGEYIAPSKEDLCRFPELSSPMVDYVQTGNKRPGFVPVSDSRMSAPIVLVIDECLDEPHLHHLQSSLHAFVDSLPPTTRIGIVLYGRTVSVYDFSEESVASADVLPGDKSPTQESLKALIYGTGIYLSPMHASLPVAHAIFSSLRPYKLNMPEASRDRCLGTAVEVALAIIQGPSAELSRGVVKRSGGNSRIIVCAGGPNTYGPGSVPHSYSHPNYPHMEKTALKRMENLGREAHRYNTVVDILCAGTCPVRVPILQPLAKASGGVLVLHDDFGEAFGVNLQRASARAAGSHGLLEVRTSGDILITQVVGPGEEAHVDTHESFKNDTALYIQMLSVEETQSFSLSMESKGDIKSDSVFFQFVMQYSNVFQADVSRIITVRLSTVDSISEYLESVQDEVATVLIAKRTLLRAKNYSNAIDMRDTVDERIIDVAMKFGSQLPKSKFYRFPKELSLLPELLFHLKRGPLLGSIIGHEDERSVLRSLFLNASFDLSLRMVAPRCLMHREGGTFEELPAHDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTELRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLRSLTPEQRTKLKSSFIHFDDPSFCEWMKSLKVVPPELT | 875 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa03g1145 | 875 | Pfam | Sec23/Sec24 helical domain | 627 | 723 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Bisa03g1145 | 875 | MobiDBLite | consensus disorder prediction | 1 | 138 | - | - | |
| Bisa03g1145 | 875 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 18 | 624 | - | - | |
| Bisa03g1145 | 875 | Pfam | Sec23/Sec24 beta-sandwich domain | 522 | 613 | IPR012990 | - | |
| Bisa03g1145 | 875 | Pfam | Sec23/Sec24 trunk domain | 278 | 504 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Bisa03g1145 | 875 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 728 | 868 | IPR036180 | - | |
| Bisa03g1145 | 875 | Gene3D | Sec23/Sec24 helical domain | 613 | 734 | - | - | |
| Bisa03g1145 | 875 | SUPERFAMILY | vWA-like | 277 | 509 | IPR036465 | - | |
| Bisa03g1145 | 875 | MobiDBLite | consensus disorder prediction | 50 | 71 | - | - | |
| Bisa03g1145 | 875 | Gene3D | - | 183 | 249 | - | - | |
| Bisa03g1145 | 875 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 187 | 260 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Bisa03g1145 | 875 | Gene3D | von Willebrand factor, type A domain | 276 | 521 | IPR036465 | - | |
| Bisa03g1145 | 875 | FunFam | Protein transport protein SEC23 | 276 | 521 | - | - | |
| Bisa03g1145 | 875 | MobiDBLite | consensus disorder prediction | 107 | 138 | - | - | |
| Bisa03g1145 | 875 | Pfam | Sec23/Sec24 zinc finger | 196 | 234 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Bisa03g1145 | 875 | SUPERFAMILY | Helical domain of Sec23/24 | 626 | 726 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Bisa03g1145 | 875 | Gene3D | Severin | 740 | 837 | IPR029006 | - | |
| Bisa03g1145 | 875 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
| Bisa03g1145 | 875 | CDD | gelsolin_like | 728 | 819 | - | - | |
| Bisa03g1145 | 875 | CDD | trunk_domain | 270 | 513 | - | - | |
| Bisa03g1145 | 875 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 159 | 871 | IPR037364 | - | |
| Bisa03g1145 | 875 | MobiDBLite | consensus disorder prediction | 80 | 94 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa03g1145 | Bisa-ChrBisa03 | 15591742 | 15595550 | Dispersed |