Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g1052 ATGACCACCACCACAGCGTCTCAGATCGTTCGATACACCACCGCCTTCATCTCCGACGTCATTTCACACTCCGAACTCCGCCGTCGCCTCATTTCCACTCTTCACCATGAGTGTTCGATCTCCAACCAAATCACCCTCAAACACCTCAATCTTGCCGTTGACACTCTAGAAAATGCCATTTCCGTCTCCAGCTCTACCATCCGGTCCTCCTCCCTCAGCCTCGCTGAGAAGCTTCTTCTTCCTCTCCCTTTAAACTCCATATCTTCTTTCCTTCTCTCTCTCATTTACACTCTCTGTAACCGCCGACTAGACGCCGCCTTAAGTCTCCTCCGAATCTTCAAGTTAAACCCTTCATTCGCCCGATCGGAAATTGCGCCCATTCTCTACGAGCAGCTATTTTCTTTCCACCTTCTCCCAGTTTTCCGATGCTTCGACGAACAGAGAACGAAGATACTGCCATCTACATCGGCAAATTCGGCACGTAATACTTTTGATTATTCAATTTTAGACGAATCTGTGGTCTTACCCTCCACGAAATTGTTGTCGCGGATGAGCGACGGTCAAGCTTCGAAACTGAGTGAGTTGGAGAGAGAATACGAAGAGGCTCTTGATGACAATTGCAGGATTATTGCCGAGTACTTCAATGAAGTTTTGGTGAATAATGATAAGGACTCGTCCATTAGTCCACCATTGTTGATACTGAAGAGAAGTCGAGAAGAGGGAATAATGGAAAACGGTCAGGAGGAGATGGAGGAAACAAAAGTGTCCTTGTTTAAGAACGGACGGTATAATCCAATTTGGGCCGAAAGGGAAGCATCTATTGAACTTTCCAGCAGCAGTTTCAGCATCAAATCCTTGAACTCGGTCTTTTATCCTCAAAGAGTCTCTCTCAAAATCCTCAAACACCAAAAATCTTCTGAAAAGCTGTCCATGCCAGCCTGCTCAAACTTAGGCGCTGAATTTGGGTCTTCGATAGATGAAAATGTGCCTTATTTTTCTTCAGAATCTGAGGCAGAAAGTAAGGAAAAAGACAAAAATACGGTATTGCTGAAGCCTCGACGAAGCCAAACCCAAAAAACAATGCAAACTAATGTTGCAGAATCCTGTGGTTTCCCAGATTATCCGATGGCAGATTACGATAACCAGCCACATGGAAGTGGAAAACATACGCCTCCCAAGGATTTCGTCTGTCCAATTACTAGCAATCTTTTTGATGATCCAGTGACTCTTGAGACAGGTCAGACATATGAACGTAAAGCTATCGAAGAATGGCTCAATAGGGGGAACTCAACTTGTCCAATCACCCGCCAGGATCTGCTAAATACCCAGCTACCTAAAACAAATTATGTGCTCAAACGACTAATTGCAAGTTGGAAAGAACAGAATCCCAATTCAAGCCCATCGTCATCTGAGAGTCTATGTGCTGAAACAGATGTTGCATTCAAGTCAATAATGCCTTCAACTTCTCCTAATAGTGTTATAACACAAGTTAACGTTGATGGGATGATTAGTGAATTACGTCATGCAATCAACAACCTGTATATGTCAGAGATTCTGGAGGAATCCGAAATGGCTGTGCTTCAAATTGAGCAGTTATGGAAAGAAGTAAATCTCGGAGTGGATATCCAGAGCATGCTATCAAAACCTCCTATCATTAATGGGTTTGTGGAGATTCTGTTTAATTCTGTTGATCCCCAGGTGCTTCAAGCAACAGTTTTTCTTCTGACCGAGATGGGTTCTAGAGATAATACTGTTATTCAGACGCTTACTCGAGTGGACTCGGATGTAGAGTGCATTATGGCGCTTTTCAAGAAAGGGTTGACAGAGGCTGTTGTATTGATATATCTTCTAGAACCTTCTGCTATGAGTCTTGCAGAAATGGACATGTTGGAGTCTCTCATAACAGTTTTCAATAAGAAAGAGGAGGACTTGCTTAAGATGTGCATAAAACCCAAGTCAGCTGCAGTACTTTTACTGGCACGGATTCTTGAAAGCAGTGAGGAGAGAACTGCATCTTCAATAGCCAAGACTTTAACTGAAAAAGTAATTGGAAGTATTGTTGGCAGCTTTGGAGCCGAGTGGGTAGATGAGAGGATTGCTGCAGTTGAGATCTTATTAAGATGCATGCAAGAGGATGGGACTTGCAGGAACACAATTGCTGAAAAACCTGAGCTGTCTCCCATTTTGGAAAGCTTCATTGGGGCAACTGATGCAGAACGTTTTAAGATAGTTCACTTTATTTATGAGTTAGTCAAATTAAATAGGAGGACACTCAATGAACAAATTCTCCACATTATAAAGGAAGAGGGTGCTTTCAGTACAATGCACACTCTACTCAATTATCTGCAGACAGCCCTTCAAGACCAACGTCCAATTGTGGCTGGCCTCCTACTCCAACTTGATCTTCTGGTAGAGCCAAGAAAGATGAGTATATACCGTGAGGAGGCAATAGATACTCTTATTTCATGCCTCAGAAACACCGAATTCCCTGCTGCCCAAGTAGTAGCTGCTGAGACAATTGTATCGTTACAAGGAAGATTCAACTTCATCGGAAAGCCTCTTACCAGAGAAGTCCTTCTTAAACGTGCTGGCCTTGACAGAGTTCAGATGGATCATATTAGCAATTTTGGTGGAGAAATTGAAACAACTCCAGAAGAAGAGAAGGCAGCTGATAATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCATGAGTTTGGTCTACTTTTTGAAGCTTTAGCAGATGGCTTGAAGAGCCGAAGTCCAGAACTAAGTTCAGCATGCTTTATATCAACTATATGGCTCACATACATGCTTTCCATTCTACCAGACACTGGAATACAAGGAGCAGCTCGTGTCTGCTTGCTCAAGCGCTTTGTATCTATATTAAAATCTGCCAAGGACACTGAAGACAGAATCCTTTCTGTGCTTGCTCTAAATACCTTTCTTCATTACCCTGATGGGTTGCATGATCTCACTTTCTACACTAAGGATGTCTTAAGAGGTTTGAGAGAGTTAAAGAGATCCTCCTCTCTGGCATCTGAAATGCTTAAAGTTCTGGTTGAAGAGAACGAACCTAAAGCAGACATCTGGATGCATAAAGAGTTAATTCAGGTAGATTGCAGTGAGAATGGAGTAGTGTCGTCTGTCATTTGTCTCAAGGATAAAATTTTTTCAGGCCATTCAGATGGAACTATTAAGGTCTGGACAGTAAAAGGTAGCTTGCTCCATCTCATACAAGAGACTCAAGAACATGTGAAGGCTGTTACAAGCTTAGCAATTTCAGAATCTGGTGACAGACTATACAGTGGTTCACTTGATCGAACTGCAAAAGTCTGGTCTATAGGAAAGGCAGGAATACATTGTGTACGGGTGTATGATATGAAAGATCACATTCATAATTTAGCTGTGACTAATAGCATATTCTGCTACATTCCTCAGGGAAACGGTGTCAAGGTTCAATCATGGAATGGAGAATCAAGGTTGTTAAACCCTAACAAATATGTGAGGTGCTTGGCTCTTGCTCATGAGAGACTGTACTGTGGATGCCACGACAGTAGTATTCAGGAGATAGATTTGAAAACAGGAACAGTCAGTACCATTCAAAGTGGTTCAAAAAAATTACTTGGCAAGGCAAATCCAATTTATGCACTGCAAATTCGTGGTGAACTTATATATGCAGCCAGCTCTTCCTTGGATGGAGTTTCTATAAAGATATGGAACGCTTCCAATTACAGTATAGTTGGATCACTGGTGACTGCATCAGAAGTGAGGGCCATGGCAATGAGCTCAACATTGATTTATTTGGGGTGCAAAGGAGGATCAGTGGAAATTTTGGATAGGAAGAAGCAGAATAGAATTGATACACTACAAATGGGTACAAATGGAAAGATTGCTTGCATGGCCGTCGATGACAATGAAGAAATTTTTGTGATTGGGACCTCAGATGGCCGAATTCAGGCATGGGGAATAGACTGA 3978 0.4233 MTTTTASQIVRYTTAFISDVISHSELRRRLISTLHHECSISNQITLKHLNLAVDTLENAISVSSSTIRSSSLSLAEKLLLPLPLNSISSFLLSLIYTLCNRRLDAALSLLRIFKLNPSFARSEIAPILYEQLFSFHLLPVFRCFDEQRTKILPSTSANSARNTFDYSILDESVVLPSTKLLSRMSDGQASKLSELEREYEEALDDNCRIIAEYFNEVLVNNDKDSSISPPLLILKRSREEGIMENGQEEMEETKVSLFKNGRYNPIWAEREASIELSSSSFSIKSLNSVFYPQRVSLKILKHQKSSEKLSMPACSNLGAEFGSSIDENVPYFSSESEAESKEKDKNTVLLKPRRSQTQKTMQTNVAESCGFPDYPMADYDNQPHGSGKHTPPKDFVCPITSNLFDDPVTLETGQTYERKAIEEWLNRGNSTCPITRQDLLNTQLPKTNYVLKRLIASWKEQNPNSSPSSSESLCAETDVAFKSIMPSTSPNSVITQVNVDGMISELRHAINNLYMSEILEESEMAVLQIEQLWKEVNLGVDIQSMLSKPPIINGFVEILFNSVDPQVLQATVFLLTEMGSRDNTVIQTLTRVDSDVECIMALFKKGLTEAVVLIYLLEPSAMSLAEMDMLESLITVFNKKEEDLLKMCIKPKSAAVLLLARILESSEERTASSIAKTLTEKVIGSIVGSFGAEWVDERIAAVEILLRCMQEDGTCRNTIAEKPELSPILESFIGATDAERFKIVHFIYELVKLNRRTLNEQILHIIKEEGAFSTMHTLLNYLQTALQDQRPIVAGLLLQLDLLVEPRKMSIYREEAIDTLISCLRNTEFPAAQVVAAETIVSLQGRFNFIGKPLTREVLLKRAGLDRVQMDHISNFGGEIETTPEEEKAADNWERKIASVLVSHEFGLLFEALADGLKSRSPELSSACFISTIWLTYMLSILPDTGIQGAARVCLLKRFVSILKSAKDTEDRILSVLALNTFLHYPDGLHDLTFYTKDVLRGLRELKRSSSLASEMLKVLVEENEPKADIWMHKELIQVDCSENGVVSSVICLKDKIFSGHSDGTIKVWTVKGSLLHLIQETQEHVKAVTSLAISESGDRLYSGSLDRTAKVWSIGKAGIHCVRVYDMKDHIHNLAVTNSIFCYIPQGNGVKVQSWNGESRLLNPNKYVRCLALAHERLYCGCHDSSIQEIDLKTGTVSTIQSGSKKLLGKANPIYALQIRGELIYAASSSLDGVSIKIWNASNYSIVGSLVTASEVRAMAMSSTLIYLGCKGGSVEILDRKKQNRIDTLQMGTNGKIACMAVDDNEEIFVIGTSDGRIQAWGID 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g1052 1325 Gene3D - 1034 1124 IPR015943 GO:0005515
Bisa03g1052 1325 CDD RING-Ubox_PUB 392 444 IPR045210 -
Bisa03g1052 1325 SUPERFAMILY WD40 repeat-like 1055 1324 IPR036322 GO:0005515
Bisa03g1052 1325 ProSiteProfiles U-box domain profile. 390 465 IPR003613 GO:0004842|GO:0016567
Bisa03g1052 1325 Gene3D - 1125 1325 IPR015943 GO:0005515
Bisa03g1052 1325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1291 1325 - -
Bisa03g1052 1325 SUPERFAMILY RING/U-box 384 465 - -
Bisa03g1052 1325 SMART WD40_4 1149 1192 IPR001680 GO:0005515
Bisa03g1052 1325 SMART WD40_4 1033 1070 IPR001680 GO:0005515
Bisa03g1052 1325 SMART WD40_4 1283 1323 IPR001680 GO:0005515
Bisa03g1052 1325 SMART WD40_4 1205 1241 IPR001680 GO:0005515
Bisa03g1052 1325 SMART WD40_4 1244 1280 IPR001680 GO:0005515
Bisa03g1052 1325 SMART WD40_4 1072 1114 IPR001680 GO:0005515
Bisa03g1052 1325 SMART Ubox_2 394 458 IPR003613 GO:0004842|GO:0016567
Bisa03g1052 1325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 377 479 IPR013083 -
Bisa03g1052 1325 Pfam WD domain, G-beta repeat 1081 1114 IPR001680 GO:0005515
Bisa03g1052 1325 Gene3D - 510 1025 IPR011989 -
Bisa03g1052 1325 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 1324 - -
Bisa03g1052 1325 SUPERFAMILY ARM repeat 25 1006 IPR016024 -
Bisa03g1052 1325 ProSiteProfiles Trp-Asp (WD) repeats profile. 1291 1325 IPR001680 GO:0005515
Bisa03g1052 1325 Coils Coil 1324 1325 - -
Bisa03g1052 1325 ProSiteProfiles Trp-Asp (WD) repeats profile. 1082 1115 IPR001680 GO:0005515
Bisa03g1052 1325 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1082 1115 - -
Bisa03g1052 1325 Coils Coil 185 205 - -
Bisa03g1052 1325 Pfam U-box domain 392 462 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g1052 Bisa-ChrBisa03 14115500 14127416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g1052 392 469 U-box Gene Family AT3G46510 51.852 1.41e-17 86.7