Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0963 ATGATGCTCGGAGAACCCCATCGACCAAACCCGACGGTTCACATACCGCCGTGGCCTGTAATCGATGATCCCATGCCGGAGATGTACTCCCCTTACCCGGTGAGCGGCGTCTCCGCCAACTCCGACTGCAATGCCAGCGGCGGCGATTACTCTTCCTATTACTTGCAAGAAGCACTGACGGGACTCCAGCGTTATCTGCCGTCCAACGATGCCGATATTGATTCCGACTCTGAGGTGTTGGGTCGAGAGATGGATGCTCCGGTGGATGCCTACTCCTGCGACCATTTCCGCATATTCGAGTTCAAGGTGAGGAGGTGCGCACGTGGCAGGTCGCATGACTGGACTGAGTGTCCTTATGCTCATCCTGGCGAGAAGGCTCGCCGGAGGGACCCGAGGAAGTATCACTATTCGGGAACTGCTTGCCCCGATTTTCGCAAAGGTAATTGTAAGAAGGGAGATGCATGTGAATTTGCCCATGGGGTGTTCGAGTGTTGGCTTCATCCGGCCCGTTATCGTACTCAGCCATGCAAGGATGGCACCAGCTGCCGCAGGAGGGTCTGTTTCTTCGCTCACACGCCGGAGCAACTGAGGGTTCTGCCTCAGCAGAGTCCGAGGAGTGCTAACTCCGCTGATTCATATGATGGGTCTCCTTTCAGGCAGGCGATTGAGTCATCCTGTGCAAAAACGCTTCCATTCATGTCCTCTCCGGGGTCTATTTCACCACCTGCGACTCCTCCAGTGGAATCTCCTCCTATGTCGCCGATGACACAGTCTCTGAGCCGCTCTCTCGGTTCGAGCTCTATCAATGAGATGGTGGCTTCTCTGCGTAATCTGCAGCTTGGAAAGGTTAAGTCACTACCCCCTTCTAGAAATGTTGCGGTGGGGTCTCCCTGTTTCGGATCCCCAAGGGGATCCGTGCTCCGACCCGGATTCTGCAGCCTCCCCTCAACCCCTACCGAGGCACCCACTCGTTCTGGTGTCAGCTATTTCGACCTTTGGGATCAGAGCTGCGAAGAGGAGCCTGTCATGGAGAGGGTGGAATCTGGAAGGGATATACGGGTGAAGATGTTTGAGAAATTGAGCAAAGAGAACTCTCTGGATCCATCGGGATCGGGTGCCGGCCCGTCAGGTGGAGCTCCTGATGTTGGCTGGGTTTCGGATCTGGTGAAGTAA 1173 0.555 MMLGEPHRPNPTVHIPPWPVIDDPMPEMYSPYPVSGVSANSDCNASGGDYSSYYLQEALTGLQRYLPSNDADIDSDSEVLGREMDAPVDAYSCDHFRIFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSANSADSYDGSPFRQAIESSCAKTLPFMSSPGSISPPATPPVESPPMSPMTQSLSRSLGSSSINEMVASLRNLQLGKVKSLPPSRNVAVGSPCFGSPRGSVLRPGFCSLPSTPTEAPTRSGVSYFDLWDQSCEEEPVMERVESGRDIRVKMFEKLSKENSLDPSGSGAGPSGGAPDVGWVSDLVK 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0963 390 PANTHER UNKEMPT FAMILY MEMBER 42 390 IPR045234 -
Bisa03g0963 390 MobiDBLite consensus disorder prediction 235 264 - -
Bisa03g0963 390 MobiDBLite consensus disorder prediction 238 252 - -
Bisa03g0963 390 Gene3D - 136 199 - -
Bisa03g0963 390 MobiDBLite consensus disorder prediction 363 390 - -
Bisa03g0963 390 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 160 IPR000571 GO:0046872
Bisa03g0963 390 FunFam Zinc finger CCCH domain-containing protein 66 93 161 - -
Bisa03g0963 390 ProSiteProfiles Zinc finger C3H1-type profile. 136 162 IPR000571 GO:0046872
Bisa03g0963 390 SMART c3hfinal6 170 193 IPR000571 GO:0046872
Bisa03g0963 390 SMART c3hfinal6 135 161 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0963 Bisa-ChrBisa03 12997453 12998625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0963 91 292 C2H2 Transcription Factor Family AT5G12850 48.585 5.44e-56 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa03g0963 zf-CCCH 3.9e-06 CL0537