LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g0922	ATGGCCTCCTGCGACGACGACGACTTCTCTCTCCTCGGTGACGATCATCACCAATCTAGCGCTGGCTCCCACCACCACCTCCACCAACCCTACGTCCCCCACTCCTTCTCCTCCGCCGTCACTCCTGTCCAGCCCGTCCAGTCGGATCCCGTTGGCGACACCCGCGAGGTCTACGGATTTGACAACGATGCCGATGCAAACGACAAGAGAAATGATCGAGAGGACGTCGCCGACGGAGCGACGTCGTACGGCTACAAAAGGCCTAAGCTCTCCAGTGCCGGGGAGTACAGGAAGGACAGGGAGGAGTGGAGCGATGCGGCGATTCTGTGTCTTCTGGAGGCTTACACGGAGAAGTTCACTCACCTGAATCGGGGGAATCTTAGAGGGAGGGACTGGGAGGAGGTTGCAGCCATAGTCAGTGAGCGGTGCGAGAACCAAACAAAGAGTGTGGAGCAATGCAAGAATAAAGTTGATAATTTGAAGAAGAGGTACAAGTTGGAAAGACATAGGATGAGTAATGGCTGCATTTCAGCCAGTCATTGGCCTTGGTTCAAGCAGATGGAACTGATCGTCGGCAATTCGCTGTCTACTAAGTATTCGCCGGATGAGGATAAAGGGATCGGTTCTGGTGGCAATTCGCCGAGGCAATCAAAGAGATATGGAGTGGCAATACCCGGCAGTGGAGGTCAACTAAATAGCATGAAGTCTAAACCAATGTCAAACCTTAGATGGCGAAGGGTAGTCTTCAAAATTAGTGGTGCAGCTCTTACTGGATCTAGCACCTGCAACATTGACCCAAAGGTGGCCACGCTAGTTTCAAAAGAAGTTGCAATAGCTTCGCGCCTTGGTGTAGAGGTGGCAATTGTTGTTGGAGGTCGCAATTTTTTCTGTGGAGATGCATGGGTAACTGCAACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCAACTGTGATGAATTCTATTTTGCTCCAATCAACTCTTGAGAAGATGGGTATTCAAACTCGTGTACAAACTACCATTGCCATGCAAGAGTTTGCTGAACCATATAATAGGCAGCGGGCCATCAGACATCTTGAGAAAGGCAGAGTTGTTATATTTGGTGGCATTGGTTTTGGCACTGGAAATCCACTCTTCTCAACCGATATAGCTGCTGCTCTTCGTGCTTCTGAGATTAATGCTGAGGCAGTCCTCAAGGGCACTAATGTAGATGGTGTATATGACTGCAACTCTCGAGACAGCAATTTCACTTTTGAGCACATATCCTTCCGGGAGCTGGTTTCAAGAGGTGCCACCTCTATGGACATGGCATCTCTGACATTCTGTGAGGAAAATGCTATTCCTGTTGTGGTTTTTAATCTACTGGAGCCTGGGAACATCTCAAAAGCATTGTGTGGAGAACAAGTTGGTACACTAATTGACCAAACTGGAGCAATATGCTGA	1452	0.4897	MASCDDDDFSLLGDDHHQSSAGSHHHLHQPYVPHSFSSAVTPVQPVQSDPVGDTREVYGFDNDADANDKRNDREDVADGATSYGYKRPKLSSAGEYRKDREEWSDAAILCLLEAYTEKFTHLNRGNLRGRDWEEVAAIVSERCENQTKSVEQCKNKVDNLKKRYKLERHRMSNGCISASHWPWFKQMELIVGNSLSTKYSPDEDKGIGSGGNSPRQSKRYGVAIPGSGGQLNSMKSKPMSNLRWRRVVFKISGAALTGSSTCNIDPKVATLVSKEVAIASRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATVMNSILLQSTLEKMGIQTRVQTTIAMQEFAEPYNRQRAIRHLEKGRVVIFGGIGFGTGNPLFSTDIAAALRASEINAEAVLKGTNVDGVYDCNSRDSNFTFEHISFRELVSRGATSMDMASLTFCEENAIPVVVFNLLEPGNISKALCGEQVGTLIDQTGAIC	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g0922	483	Gene3D	-	239	477	IPR036393	-
	Bisa03g0922	483	Hamap	Uridylate kinase [pyrH].	242	477	IPR015963	GO:0005737\|GO:0006221\|GO:0033862
	Bisa03g0922	483	CDD	AAK_UMPK-PyrH-Ec	245	477	IPR015963	GO:0005737\|GO:0006221\|GO:0033862
	Bisa03g0922	483	FunFam	Aspartate/glutamate/uridylate kinase family protein	103	166	-	-
	Bisa03g0922	483	MobiDBLite	consensus disorder prediction	15	84	-	-
	Bisa03g0922	483	Pfam	Amino acid kinase family	246	456	IPR001048	-
	Bisa03g0922	483	Pfam	Myb/SANT-like DNA-binding domain	100	188	IPR044822	-
	Bisa03g0922	483	MobiDBLite	consensus disorder prediction	34	48	-	-
	Bisa03g0922	483	Coils	Coil	143	170	-	-
	Bisa03g0922	483	FunFam	Uridylate kinase isoform A	236	482	-	-
	Bisa03g0922	483	PANTHER	URIDYLATE KINASE	96	481	-	-
	Bisa03g0922	483	Gene3D	-	103	166	-	-
	Bisa03g0922	483	MobiDBLite	consensus disorder prediction	56	80	-	-
	Bisa03g0922	483	SUPERFAMILY	Carbamate kinase-like	243	476	IPR036393	-
	Bisa03g0922	483	MobiDBLite	consensus disorder prediction	201	221	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g0922	Bisa-ChrBisa03	12308588	12312415	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g0922	103	194	Trihelix Transcription Factor Family	AT3G14180	40.426	7.71e-17	80.9

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	Trihelix	Bisa03g0922		AA_kinase	1.5e-24	No_clan