Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0911 ATGGCGAACACTAATACTACGACGGTCGTCGCCAGCCCGGCTTCGCTTTACGTCGGCGATCTTCACCCTGACGTCACCGATGGTAAGCTGTTCGATGTATTCTCCGAGTTCAAGAGCCTCACTTCTGTTCGGGTCTGCAGGGACTCCTCTACCGGCAGGTCGCTCTGTTACGGCTACGTCAACTTCGTCTCTCCTCAAGATGCAATTCGTGCTATTGAGGTGAAGAATCATTCTACACTGAATGGGAAGGCGATGAGGCTCATGTGGTCAAATCGTGATCCTGATGCAACTAAAAGCGGCATAGGGAACGTGTTTGTTAAAAATCTACCTGAATCAATAGATAATGTGGGATTACAAGATTTGTTTAAAAAATTTGGTGTTATTTTGTCCTGCAAAGTTGTCACGTCTGAGGATGGGAAAAGTAAAGGATATGGCTATGTCCAGTTTCAGTCAGAGGAATCTGCAAATGCTGCCATTGAGAAGCTGAATGGCTTTACTGTCAAAGACAAGCAGATTTATGTTGGGAAGTTTGTGAAAAAAAGTGACCGCATTCTGCCAAATCCTGATGCCAAATTTACAAATTTGTATATCAAGAATTTGGACCCAAAAATTACAGAAGAGCTTCTACAGGAAAAGTTCTCGTCTTTTGGCAAAATAGTTAGCTTAGTTATTGCAAAGGACGACAACGGGATTTCTAAGGGTTTCGGCTTTGTGAACTTTGATAACCCAGATGATGCTAGACGGGCATTGGAAGCAATGAATGGATCACAACTTGGTTCAAAGATGCTCTATGTAGCCAGGGCACAAAAGAAGGCTGAGCGGGAGCATATTTTGCACAATCAGTTTGAGGAGAAACGTAAAGAACAAATCTTAAAATACAAGGTATCAAATGTCTATGTGAAGAACATAGATGATGATGTTAGTGATGAAGAACTACGGGATTTTTTTCGTGCATGTGGCTCAATAACGTCCGCAGTAGTCATGCGAGATGCCAAAGGGATAAGCAAGGGTTTTGGTTTTGTTTGCTTCTCTACCCCTGAAGAGGCTAATAAAGCTGTGAACACTTTTCATGGATATATGTTTCATCGCAAACCGTTATATGTTGCTATTGCTCAAAGGAAGGAGGATAGGCAAGCACAATTGCAGCTTCAGCACGCACAGCGAATGGCAGGACTAACTGGACCTTCAATAGCTGTTATTCCTGGTGGATATTCTCCTTACTACTATGCAGCAGCTACTGGTGCTGTTCCACAGGTGCCTTCTCGACCTGGGCTAATGTATCAACCTCTGGGGTTGACACCAGGATGGAGGGCTAATGGCTTTGCACCTCCTACCAGACCATTTCAACAGTCACCTCTTCCTATGGTTTCTAATACTATTAGGCAAAATAGGCAAAACAGGGGCCGGATGAATGGGCATGCACTTTCACAGGGAAATGCTCACTCTGGTACACAGTTGCCGCAATTGCGTCAGCCTTTCCAGTCAGTAACCTCTTCAAAAGACTCTGGTGCTCAGCAGCGGACTGGGCAGACCAAGTATGTGCCAAATGGGCGCCAACCTGAAATGGAGAAAGTATCTGGAGTTTCATCTGGTGGTTCTAACTCAGCTGGAGGATCCCCGGGATCAGAAATGCTGCACAGCATGCTTGCTGCTGCTACTCTGGAGCAGCAGAAACAGATACTTGGCGAGCATCTCTACCCACTGGTCCATAAACTCAAGCCTGGTCTAGCGGCAAAGATTACAGGGATGCTTTTGGAGATGGACAATGGAGAATTGCTGCTTCTCTTGGAGTCTCCAGAGTCTCTTACTGCCAAGGTGGAAGAAGCTGTGCAGGTGCTGAAGAACTCTAAGACCAAAGTTTCTGGCCAGGATGTACTTCATCCAAATTACCTCTCAGCTGAAGTTGCGGTGAATTGA 1917 0.4538 MANTNTTTVVASPASLYVGDLHPDVTDGKLFDVFSEFKSLTSVRVCRDSSTGRSLCYGYVNFVSPQDAIRAIEVKNHSTLNGKAMRLMWSNRDPDATKSGIGNVFVKNLPESIDNVGLQDLFKKFGVILSCKVVTSEDGKSKGYGYVQFQSEESANAAIEKLNGFTVKDKQIYVGKFVKKSDRILPNPDAKFTNLYIKNLDPKITEELLQEKFSSFGKIVSLVIAKDDNGISKGFGFVNFDNPDDARRALEAMNGSQLGSKMLYVARAQKKAEREHILHNQFEEKRKEQILKYKVSNVYVKNIDDDVSDEELRDFFRACGSITSAVVMRDAKGISKGFGFVCFSTPEEANKAVNTFHGYMFHRKPLYVAIAQRKEDRQAQLQLQHAQRMAGLTGPSIAVIPGGYSPYYYAAATGAVPQVPSRPGLMYQPLGLTPGWRANGFAPPTRPFQQSPLPMVSNTIRQNRQNRGRMNGHALSQGNAHSGTQLPQLRQPFQSVTSSKDSGAQQRTGQTKYVPNGRQPEMEKVSGVSSGGSNSAGGSPGSEMLHSMLAAATLEQQKQILGEHLYPLVHKLKPGLAAKITGMLLEMDNGELLLLLESPESLTAKVEEAVQVLKNSKTKVSGQDVLHPNYLSAEVAVN 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0911 638 SMART rrm2_1 194 266 IPR003954 GO:0003676
Bisa03g0911 638 SMART rrm2_1 297 369 IPR003954 GO:0003676
Bisa03g0911 638 SMART rrm2_1 103 175 IPR003954 GO:0003676
Bisa03g0911 638 SMART rrm1_1 103 175 IPR000504 GO:0003723
Bisa03g0911 638 SMART rrm1_1 194 266 IPR000504 GO:0003723
Bisa03g0911 638 SMART rrm1_1 15 88 IPR000504 GO:0003723
Bisa03g0911 638 SMART rrm1_1 297 369 IPR000504 GO:0003723
Bisa03g0911 638 FunFam Polyadenylate-binding protein 539 625 - -
Bisa03g0911 638 Gene3D - 279 387 IPR012677 -
Bisa03g0911 638 Gene3D - 184 278 IPR012677 -
Bisa03g0911 638 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 14 614 IPR006515 GO:0003723
Bisa03g0911 638 Gene3D - 2 100 IPR012677 -
Bisa03g0911 638 CDD RRM4_I_PABPs 296 373 - -
Bisa03g0911 638 SMART poly_2 553 616 IPR002004 GO:0003723
Bisa03g0911 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 104 172 IPR000504 GO:0003723
Bisa03g0911 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 85 IPR000504 GO:0003723
Bisa03g0911 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 366 IPR000504 GO:0003723
Bisa03g0911 638 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 262 IPR000504 GO:0003723
Bisa03g0911 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 102 179 IPR000504 GO:0003723
Bisa03g0911 638 FunFam Polyadenylate-binding protein 6 98 - -
Bisa03g0911 638 FunFam Polyadenylate-binding protein 99 183 - -
Bisa03g0911 638 SUPERFAMILY PABC (PABP) domain 545 624 IPR036053 GO:0003723
Bisa03g0911 638 MobiDBLite consensus disorder prediction 493 515 - -
Bisa03g0911 638 FunFam Polyadenylate-binding protein 279 387 - -
Bisa03g0911 638 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 541 618 IPR002004 GO:0003723
Bisa03g0911 638 MobiDBLite consensus disorder prediction 526 541 - -
Bisa03g0911 638 CDD RRM2_I_PABPs 100 176 IPR045305 -
Bisa03g0911 638 PANTHER RNA BINDING PROTEIN 14 82 - -
Bisa03g0911 638 Gene3D - 540 629 - -
Bisa03g0911 638 SUPERFAMILY RNA-binding domain, RBD 293 391 IPR035979 GO:0003676
Bisa03g0911 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 270 IPR000504 GO:0003723
Bisa03g0911 638 Gene3D - 102 183 IPR012677 -
Bisa03g0911 638 SUPERFAMILY RNA-binding domain, RBD 12 98 IPR035979 GO:0003676
Bisa03g0911 638 CDD RRM3_I_PABPs 192 271 - -
Bisa03g0911 638 Pfam Poly-adenylate binding protein, unique domain 548 613 IPR002004 GO:0003723
Bisa03g0911 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 373 IPR000504 GO:0003723
Bisa03g0911 638 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 14 92 IPR000504 GO:0003723
Bisa03g0911 638 FunFam Polyadenylate-binding protein 184 278 - -
Bisa03g0911 638 MobiDBLite consensus disorder prediction 493 541 - -
Bisa03g0911 638 SUPERFAMILY RNA-binding domain, RBD 103 274 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0911 Bisa-ChrBisa03 12148972 12153507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0911 14 636 Eukaryotic Initiation Factors Gene Family AT2G36660 53.589 0.0 634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0911 03 12148972 12153507 Bisa07g2284 07 52355545 52360404 CCT
Bisa03g0911 03 12148972 12153507 Bisa03g0911 03 12148972 12153507 ECH