Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0909 ATGTCAGAGTTGGTGCTTGCTTTTTATCATCGAGTTGCCTCCAGAGGAACGCCTTTTATTGCTATGGCGGAATCAGTCTCTGGGGACTCCTCCAACCCCAATCCTCCGCCGGCGACCGCGCCTGTTCGCAAAAGTTGGGCTGATGAGGCGGAGGAGGAAGTTCCGGAGCAAACGAATGCTGCCTCCTCGAGTTCGACGACAGTCTCGTCGCTTAACGTTGACGAATTAACAATCGACGAGAACAAGAAGGCTACTAAGTCTTTGAATGAGCCCGATGATTCCAACATCCAAGCGGTTACGTCGGGTGATACTCCGTATACTTCAGCGAGCACCTTTGAAGATTTAAATCTCTCGCCAGAGCTGATAAAGGGATTGTATGTTGAGATGAAATTCCAGAAGCCTAGCAAAATTCAGGCTATCAGTTTGCCGATGATTTTGAACCCTCCTCATAAGGATCTGATCGCGCAAGCACATAATGGTTCTGGCAAGACAACATGTTTTGTTCTTGGGATGCTGAGTCGTGTTGATCCTAAGGTGCAGGCTCCTCAGGCTCTTTGCATTTGTCCAACGAGAGAATTGGCAATTCAGAATATGGAAGTTCTTCGGAAGATGGGTAAGTACACGGGGATTAGTTCTGAATGTGCCATTCCAACAGACAGCAGAAATTCTATCCCAATATCAAAACGACCACCTATGATGGCACAAGTTGTGATTGGGACTCCTGGCACTATAAAGAAATGGATGTCATATAAGAAACTGGGCGCGAGCAGATTAAAGATTCTAGTTTTTGACGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTCAAGATGATTCCTTGAGGATAATGAAAGAAATAGGAAAAGTAAATCCGCACTGTCAGGTTCTTCTTTTTTCTGCTACATTTAATGACACCGTCAAGAATTTTGTTTCGAGGACAGTTAAGAAGGATCATAATCAACTTTTTGTGAAGAAAGAAGAATTATCCTTAGAGGCAGTGAAGCAATATAAGGTGAACTGTCCTGATGAACTCTCTAAGATTGAAGTGATCAAAGATTACATATTTGAAATAGGAGAGAATGTGGGACAAACCATTGTTTTTGTGCGGACAAGAAATAGTGCAAGGATGTTGCATAAATCACTTGTTGATTTGGGCTATGAGGTTACTTCCATACAAGGTGCTCTTGAAAACGAAGAGAGAGACAAGATTGTCAAGGAGTTCAGAGATGGTTTAACTCAAGTTCTTATATCAACTGATGTTCTTGCCCGTGGCTTTGATCAGCAACAGGTGAATTTGGTCATTAACTATGATCTTCCAGTTAAACATACTGCTGAGTATACCCGTGAACTAGAGCCTGATTATGAGGTGTATGTGCACAGGGTTGGTAGGGCAGGACGTTTTGGGCGCAAGGGCGCTGTATTTAACCTGATATGTGGTGAAAGGGATGAAAAGCTCATGGCAAAGATTGAGAATCACTTTGGCACCCATGTAACTGAGGTCCAAGAAAAGAACGTTGAAGACTATAAACGTGCTCTTAAGGAGGCTGGTTTACTGCAATAA 1560 0.4333 MSELVLAFYHRVASRGTPFIAMAESVSGDSSNPNPPPATAPVRKSWADEAEEEVPEQTNAASSSSTTVSSLNVDELTIDENKKATKSLNEPDDSNIQAVTSGDTPYTSASTFEDLNLSPELIKGLYVEMKFQKPSKIQAISLPMILNPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCICPTRELAIQNMEVLRKMGKYTGISSECAIPTDSRNSIPISKRPPMMAQVVIGTPGTIKKWMSYKKLGASRLKILVFDEADQMLAEDGFQDDSLRIMKEIGKVNPHCQVLLFSATFNDTVKNFVSRTVKKDHNQLFVKKEELSLEAVKQYKVNCPDELSKIEVIKDYIFEIGENVGQTIVFVRTRNSARMLHKSLVDLGYEVTSIQGALENEERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYTRELEPDYEVYVHRVGRAGRFGRKGAVFNLICGERDEKLMAKIENHFGTHVTEVQEKNVEDYKRALKEAGLLQ 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0909 519 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 110 139 IPR014014 GO:0003724
Bisa03g0909 519 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 80 489 - -
Bisa03g0909 519 MobiDBLite consensus disorder prediction 90 107 - -
Bisa03g0909 519 MobiDBLite consensus disorder prediction 26 107 - -
Bisa03g0909 519 SMART ultradead3 130 336 IPR014001 -
Bisa03g0909 519 Gene3D - 327 516 IPR027417 -
Bisa03g0909 519 Pfam Helicase conserved C-terminal domain 346 468 IPR001650 -
Bisa03g0909 519 CDD DEADc_DDX19_DDX25 117 316 - -
Bisa03g0909 519 Gene3D - 88 326 IPR027417 -
Bisa03g0909 519 Pfam DEAD/DEAH box helicase 136 308 IPR011545 GO:0003676|GO:0005524
Bisa03g0909 519 CDD SF2_C_DEAD 333 477 - -
Bisa03g0909 519 SMART helicmild6 375 468 IPR001650 -
Bisa03g0909 519 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 320 IPR014001 -
Bisa03g0909 519 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 516 IPR001650 -
Bisa03g0909 519 MobiDBLite consensus disorder prediction 56 75 - -
Bisa03g0909 519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 487 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0909 Bisa-ChrBisa03 12129154 12135563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0909 103 507 Eukaryotic Initiation Factors Gene Family AT1G72730 35.904 7.24e-70 228