Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0879 ATGGAGGCCATAGCTGCGTGCAAGGACCAGACCCAAATCATGAAGGGCAAGCGCACCAAGCGTCCCAGGCTTCCCTCCCCTCTAAGCCTAGCCATGCCTTCCACTTCTTCTAGCAGCACTCCAGGAAGAAGCAGCCACGACGAGAATTCAGGAGGAGTCGTAATTGAAATGCCCACGACCTCAACTACTCCCGTGTTTTTGAGAGAAAGCACTGAAGAAGAGGAAGACATGGCCAACTGTTTGATCCTTCTCGCTCAAGGCCATCTTTCCCCTAAATCGTCTTACAACAACACCACCAATAAGGCATCGTCGGAGCAATACCTTTATCAGTGCAAGACCTGTGACCGTTGCTTCCCTTCCTTCCAAGCCCTTGGTGGACACAGAGCCAGCCACAAGAAACCCAAGCCAGTTCCTGAACCAAAGATGGAAGCGGTTGGCTCTGCCAATGAAGACGGTGACCGTTATGACCGTTGTGACCGTTACGACCCCACTGCCAGCACCGCCCTCTCCTTGCAAATATCAAACAGGGCTTCTTATAGCAGTACTGGTAATAAGTCGAAGGTTCATGAGTGCTCTATATGTGGGGCAGAGTTCTCGTCTGGGCAAGCTTTGGGGGGTCATATGAGGCGACACAGAACAATAGCCAACACGTGTGCGACATCTGCGAGTGTGAGCAACGTTGTTGGTGGGAATTCTGAATCACAGGAAGCCAAAAAACCCAGGAATGTTTTGAAGTTGGACTTGAATCTGCCGGCGCCGGAAGATGATCAGAGAGAGTCCAAGTTGTCCCGCCCCGAGAGGCCCTCGTACACTGCTAAGAGGCAGCGAAGGGAGCAAAAGGCCACAATGGCAGTTCCAGGGAGGCGCAATGCCCTAAACGACGACGACGACGATAACTTCGAAGATGACAACGCCCTCTTTGAAGAAGATGGCCTTGTGGAGCTTGTAGAATCCGATACGCCTCCTCATCTCCGCGACCTAGCCGCCGCTTCCCAGTCCGGTGACCTCGACGCCCTCCGCCTCGCCCTAGATAACTTGGCTGGCAATATTGACGAGCCAGTGGAAGATGGGGATACCGCACTACATCTGACCTGCTTATATGGCCACTTGTCCTGTGTCCAGCTACTTCTTGAAAGAGGAGCAAACTTGGAGTCTAAGGATGAGGATGGTGCAATTCCTTTACATGATGCTTGTGCAGGAGGATATGTAGAGATAGTCCAACTGCTATTTAACAGAGCTAATGATGCAGAGCATATAAGGAGTATGCTAGAATCAGTAGATTCAGAGGGTGATACTCCTCTCCATCATGCCGCAAGAGGCGAGCATGTTGATGTCATTAGATTGTTGCTGTCTTATGGTGCGCCTCTCACAAAGGCAAACCTATACGGAAAGACCCCAGCAGAATTACCAAATCAGGACACCGATGCAAGGAGACTGTTGGAAGCAGCTGCTACTCCCATTCCATCCCATTAG 1473 0.5132 MEAIAACKDQTQIMKGKRTKRPRLPSPLSLAMPSTSSSSTPGRSSHDENSGGVVIEMPTTSTTPVFLRESTEEEEDMANCLILLAQGHLSPKSSYNNTTNKASSEQYLYQCKTCDRCFPSFQALGGHRASHKKPKPVPEPKMEAVGSANEDGDRYDRCDRYDPTASTALSLQISNRASYSSTGNKSKVHECSICGAEFSSGQALGGHMRRHRTIANTCATSASVSNVVGGNSESQEAKKPRNVLKLDLNLPAPEDDQRESKLSRPERPSYTAKRQRREQKATMAVPGRRNALNDDDDDNFEDDNALFEEDGLVELVESDTPPHLRDLAAASQSGDLDALRLALDNLAGNIDEPVEDGDTALHLTCLYGHLSCVQLLLERGANLESKDEDGAIPLHDACAGGYVEIVQLLFNRANDAEHIRSMLESVDSEGDTPLHHAARGEHVDVIRLLLSYGAPLTKANLYGKTPAELPNQDTDARRLLEAAATPIPSH 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0879 490 ProSiteProfiles Ankyrin repeat region circular profile. 429 454 - -
Bisa03g0879 490 ProSiteProfiles Ankyrin repeat region circular profile. 356 388 - -
Bisa03g0879 490 ProSiteProfiles Ankyrin repeat profile. 356 388 IPR002110 GO:0005515
Bisa03g0879 490 Gene3D Classic Zinc Finger 106 211 - -
Bisa03g0879 490 MobiDBLite consensus disorder prediction 224 299 - -
Bisa03g0879 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Bisa03g0879 490 Gene3D - 321 486 IPR036770 -
Bisa03g0879 490 MobiDBLite consensus disorder prediction 1 63 - -
Bisa03g0879 490 SUPERFAMILY beta-beta-alpha zinc fingers 108 211 IPR036236 -
Bisa03g0879 490 ProSiteProfiles Ankyrin repeat region circular profile. 389 415 - -
Bisa03g0879 490 SMART ANK_2a 356 385 IPR002110 GO:0005515
Bisa03g0879 490 SMART ANK_2a 322 352 IPR002110 GO:0005515
Bisa03g0879 490 SMART ANK_2a 389 418 IPR002110 GO:0005515
Bisa03g0879 490 SMART ANK_2a 429 458 IPR002110 GO:0005515
Bisa03g0879 490 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Bisa03g0879 490 MobiDBLite consensus disorder prediction 251 283 - -
Bisa03g0879 490 MobiDBLite consensus disorder prediction 29 47 - -
Bisa03g0879 490 PANTHER ZINC FINGER PROTEIN ZAT5 59 271 - -
Bisa03g0879 490 Pfam Ankyrin repeat 430 458 IPR002110 GO:0005515
Bisa03g0879 490 FunFam BRCA1-associated RING domain protein 1 321 487 - -
Bisa03g0879 490 ProSiteProfiles Ankyrin repeat profile. 389 421 IPR002110 GO:0005515
Bisa03g0879 490 MobiDBLite consensus disorder prediction 127 155 - -
Bisa03g0879 490 SUPERFAMILY Ankyrin repeat 325 469 IPR036770 -
Bisa03g0879 490 Pfam C2H2-type zinc finger 109 134 - -
Bisa03g0879 490 Pfam C2H2-type zinc finger 188 213 - -
Bisa03g0879 490 SMART c2h2final6 109 131 IPR013087 -
Bisa03g0879 490 SMART c2h2final6 189 211 IPR013087 -
Bisa03g0879 490 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 211 IPR013087 -
Bisa03g0879 490 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Bisa03g0879 490 ProSiteProfiles Ankyrin repeat profile. 429 461 IPR002110 GO:0005515
Bisa03g0879 490 Pfam Ankyrin repeats (3 copies) 328 412 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0879 Bisa-ChrBisa03 11647390 11652813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0879 9 262 C2H2 Transcription Factor Family AT2G28200 43.478 3.01e-54 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa03g0879 Ank_2 1.4e-12 CL0465