Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0876 ATGGATTGTACTGTAAATCGGGTTTATTTGTATGATTCCACTCCATTTTCCCCTCTTTTTAAGCAGGAGAATGAGGTTGAAGACGCTTGCCAAAAAGGGACGGGATCCGTTAACGAGGGTATATTCAAGAATGGTGGCAACCCTCAAATGAGTTGCGGAATCAACCGAGAACAAGATAAGTTCACCACAGTAGAAGAAGCCTCGACGATCGCGATCGTGTGGAAGCTGGAGGGGATAGCACAAGCGGATAGCAAACTCAAGGTTTTGAAGAGAAATGAGACAGTGACGTTGCAGGAGCAGAATCTAGAAATAATGGACTGCATCGTAGAGCCCCAGGTGTCCACCCTTGGAAGTTCTCATCTAGATGACGGCTCTCTATCCGAAATAGGATATGGGCGTTACGGGTGTTCACACTATAAAAGAAGATGCAAGATAATAGCACCTTGTTGCAATGAAATATTCGATTGCAGACATTGCCATAATGAATCTAAGAATTCGATTGAGGTCGACCCTGTCGATCGCCATGACATTCCTCGTCACGATTTGAAGAGAGTTATCTGCTCCTTGTGTAGCACAGAGCAAGATGTCCAACAGACATGTATTCAATGTGGTGTTTGCATGGGGAAATACTTCTGCTCCAAGTGCAAGTTTTTTGACGATGATGTATCAAAGAATCAATACCATTGCAATGAATGTGGTATCTGCAGAATTGGAGGCGAGGAGAATTTTTTTCACTGTAACAAATGTGGATGTTGCTATTCAACATTGTTGAAGGATTCACATCACTGTGTGGAAAAAGCAATGCATCACAATTGCCCAGTTTGCTTTGAGTTTCTTTTCGATACCACTAAGGACATCACTGTATTGCCATGTGGTCACACCATACATCTGGGATGTGTGCAAGAAATGGAGCAGCATTTCCAGTATTCATGCCCTGTTTGCTCAAAATCTTTTTGTGATATGTCGCGCGTGTGGGAGAGACTGGATCATGAGGTTGCATCAACACCTATGCCAGAAATGTATCAGAATAAGATGGTTTGGATTCTGTGCAATGACTGTGGGGAAACATCAGAGGTACAATTTCATGTTGTGGCGCACAAGTGCGTTAAATGCAAATCCTACAACACAAGACTGACGCAAGGTGGGCCTGCTTCATCATGCTCATCCAACATAGAAGAGATGGTGAGATGA 1191 0.4341 MDCTVNRVYLYDSTPFSPLFKQENEVEDACQKGTGSVNEGIFKNGGNPQMSCGINREQDKFTTVEEASTIAIVWKLEGIAQADSKLKVLKRNETVTLQEQNLEIMDCIVEPQVSTLGSSHLDDGSLSEIGYGRYGCSHYKRRCKIIAPCCNEIFDCRHCHNESKNSIEVDPVDRHDIPRHDLKRVICSLCSTEQDVQQTCIQCGVCMGKYFCSKCKFFDDDVSKNQYHCNECGICRIGGEENFFHCNKCGCCYSTLLKDSHHCVEKAMHHNCPVCFEFLFDTTKDITVLPCGHTIHLGCVQEMEQHFQYSCPVCSKSFCDMSRVWERLDHEVASTPMPEMYQNKMVWILCNDCGETSEVQFHVVAHKCVKCKSYNTRLTQGGPASSCSSNIEEMVR 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0876 396 Gene3D - 343 384 - -
Bisa03g0876 396 ProSiteProfiles Zinc finger CHY-type profile. 129 205 IPR008913 GO:0008270
Bisa03g0876 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 265 317 IPR013083 -
Bisa03g0876 396 ProSiteProfiles Zinc finger RING-type profile. 272 315 IPR001841 -
Bisa03g0876 396 SUPERFAMILY RING/U-box 271 321 - -
Bisa03g0876 396 Pfam Zinc-ribbon 319 377 IPR039512 -
Bisa03g0876 396 Pfam Ring finger domain 271 314 IPR001841 -
Bisa03g0876 396 SMART ring_2 272 314 IPR001841 -
Bisa03g0876 396 Pfam CHY zinc finger 136 217 IPR008913 GO:0008270
Bisa03g0876 396 ProSiteProfiles Zinc finger CTCHY-type profile. 207 271 IPR017921 -
Bisa03g0876 396 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 107 380 - -
Bisa03g0876 396 SUPERFAMILY Zinc hairpin stack 208 265 IPR037275 -
Bisa03g0876 396 SUPERFAMILY CHY zinc finger-like 133 207 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0876 Bisa-ChrBisa03 11621162 11629743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0876 134 381 C2H2 Transcription Factor Family AT3G18290 40.945 1.23e-54 192