Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0873 ATGCTCCGAACAAGCTGCATTCTGCTAATCTCTCTTCTGGCTTCATTTCTCCCTCTTGGAAGAGCAATGCTGAACCTCACTCTTCCTGGGCAACATCCCGACCCAGATTCTGTCGTACGAGAGGTTCATAGAAAAGTGAATGCTTCAATTGCAAGAAGGCAAATGCTAGATGAGTCGGAGATAGAGTCGTCGTGCCTAACAGGGAACCCCATTGATGATTGCTGGAAATGCGACCCGAATTGGCCCAACAACAGGCAGAGGTTAGCGGACTGCGCGATTGGGTTCGGGCAGTACGCCATGGGAGGGAAGGGTGGGGAGTTCTACGTCGTGACGGACTCTTCAGACGACGATGCCGTGAGCCCAAAGCCTGGGACCCTCAGATACGCTGTGATACAGACACAGCCACTGTGGATTGTGTTCCCCAGTAACATGATGATTAAGCTGTCTCAGGAGCTCATCTTTAACAACTACAAGACCCTTGATGGGCGTGGCGCCGATGTCCACATTGTGGGAGGTGGCTGCATTACTCTCCAGTATATCAGCAATGTCATCATCCACAACATTCACGTCCACCATTGCCATCCCTCAGGGGAGGCTAACGTGCGGTCGAGCCCAGAGCACTACGGATGGCGGACAGAGTCGGACGGCGATGCGATATCCATATTCGGATCGAAAGACATCTGGATCGACCACTGCACGCTGTCTCGCTGCAAAGACGGGTTGATCGACGCCGTGATGGGGTCGACGGGCATCACCATATCCAACAACTTCTTCTCCCACCACAACGAGGTCATGCTCCTGGGTCACAGCGACGACTACCTCCCTGACTCGGGCATGCAGGTCACCATCGCCTTCAACCACTTCGGAGAGCAGCTCGTCCAGAGGATGCCACGTTGCAGAAGGGGATACATCCACGTCGTCAACAACGACTACACCCACTGGGAGATGTACGCGATCGGAGGCAGCGGAAACCCTACCATTAACAGCCAGGGGAATCGCTATACTGCGCCGACTAATCCCAACGCGAAGGAGGTCACGAAGCGCGTGGACACGGAGGAAGGCAAGTGGAGAGGCTGGAATTGGCGATCGGAAGGGGATATGATGGTGAACGGAGCATTCTTCGTGGCTTCAGGAGAAGGGGTTGAGGTTAAGTACGAGAAGGCCTACAGTATCGAGCCTAAGTCCGCCGATCACATTGATTTCCTCATTATGCACGCCGGCGTCCTCGGGGTTTCCAGGGACAATACCCTCGGTATGTGGAGTAGAGGGCCCAACAGTGGGGATGAAATATCAGTGTCAGGCCCAGAATACACCGACGACATGTCTGGCAGTGCCAGGTCGCTGCCACGTTCGTCTGTTATCACTCTTATCTCCTCCTTCATTCCATTGCTGTGCTTGTTAATTGTTGTGCTATAA 1416 0.5388 MLRTSCILLISLLASFLPLGRAMLNLTLPGQHPDPDSVVREVHRKVNASIARRQMLDESEIESSCLTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYAMGGKGGEFYVVTDSSDDDAVSPKPGTLRYAVIQTQPLWIVFPSNMMIKLSQELIFNNYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHVHHCHPSGEANVRSSPEHYGWRTESDGDAISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEQLVQRMPRCRRGYIHVVNNDYTHWEMYAIGGSGNPTINSQGNRYTAPTNPNAKEVTKRVDTEEGKWRGWNWRSEGDMMVNGAFFVASGEGVEVKYEKAYSIEPKSADHIDFLIMHAGVLGVSRDNTLGMWSRGPNSGDEISVSGPEYTDDMSGSARSLPRSSVITLISSFIPLLCLLIVVL 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0873 471 PRINTS Pollen allergen Amb family signature 295 314 IPR018082 -
Bisa03g0873 471 PRINTS Pollen allergen Amb family signature 115 140 IPR018082 -
Bisa03g0873 471 PRINTS Pollen allergen Amb family signature 215 236 IPR018082 -
Bisa03g0873 471 PRINTS Pollen allergen Amb family signature 388 411 IPR018082 -
Bisa03g0873 471 PRINTS Pollen allergen Amb family signature 317 336 IPR018082 -
Bisa03g0873 471 PRINTS Pollen allergen Amb family signature 91 108 IPR018082 -
Bisa03g0873 471 PRINTS Pollen allergen Amb family signature 151 167 IPR018082 -
Bisa03g0873 471 PRINTS Pollen allergen Amb family signature 359 383 IPR018082 -
Bisa03g0873 471 PANTHER PECTATE LYASE 18-RELATED 31 412 IPR045032 GO:0030570
Bisa03g0873 471 Pfam Pectate lyase 156 332 IPR002022 -
Bisa03g0873 471 SMART amb_all 143 340 IPR002022 -
Bisa03g0873 471 Gene3D - 68 410 IPR012334 -
Bisa03g0873 471 SUPERFAMILY Pectin lyase-like 64 395 IPR011050 -
Bisa03g0873 471 FunFam Pectate lyase 68 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0873 Bisa-ChrBisa03 11607005 11609833 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0873 1 466 Polysaccharide Lyase AT3G53190 73.474 0.0 688