Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0872 ATGAAAGGTGAAAATTTGCGTAAGGGACCTTGGCTCCAAGAGGAAGATGAGATACTCACCACCTTTGTTACTTGTCTTGGGGAACGAAGGTGGGATTCCCTTGCCGAAGTGACTGGACTTAGGAGAGGTGGTAAAAGTTGCAGGTTAAGGTGGATGAACTATCTTCGTCCAAATCTGAAGCATGGCCCTTTTAGTGTTGAAGAAGAGCGAGTCGTTCTTCAACTTCACCACCAATGGGGTAACAAGTGGTCAAAGATTGCACGCAATCTACAAGGAAGAACAGATAATGAAGTAAAGAACTATTGGAGAACCCACTTAAGAAAGAAAGCACGAATTCAACGCGAAGATGAATTCCAATATAAACTAGACAACACTGAACAAGGAGCCTTCGGTGAGAAAAGTATTAATGATGTGGTTTGCAAGGATTACAACCAAGTGAACCTTGAATTTCAAGAAGATCACGTTGCAACTAAAGATAGCTCCTTTCAAGCTTTTCCAATATCAGAATGGGAGTTGACATCAGATTGGATAGCAGAATTGCAAAAGGATCAGAGTGAGATAGCTTATGAATATGACTATAAAAGCACGGAGTCTAGTGAATCTTATTCAACATGGTTTGGGGATGACTATGATGCATGGACATATTCAGATTCCCTTTGGGACATGAATTAA 672 0.4077 MKGENLRKGPWLQEEDEILTTFVTCLGERRWDSLAEVTGLRRGGKSCRLRWMNYLRPNLKHGPFSVEEERVVLQLHHQWGNKWSKIARNLQGRTDNEVKNYWRTHLRKKARIQREDEFQYKLDNTEQGAFGEKSINDVVCKDYNQVNLEFQEDHVATKDSSFQAFPISEWELTSDWIAELQKDQSEIAYEYDYKSTESSESYSTWFGDDYDAWTYSDSLWDMN 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0872 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Bisa03g0872 223 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Bisa03g0872 223 Gene3D - 1 61 - -
Bisa03g0872 223 FunFam Myb transcription factor 8 60 - -
Bisa03g0872 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Bisa03g0872 223 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Bisa03g0872 223 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 141 IPR044676 GO:0003700|GO:0006355|GO:0043565
Bisa03g0872 223 Gene3D - 63 109 - -
Bisa03g0872 223 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Bisa03g0872 223 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Bisa03g0872 223 CDD SANT 63 106 IPR001005 -
Bisa03g0872 223 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Bisa03g0872 223 SMART sant 60 108 IPR001005 -
Bisa03g0872 223 SMART sant 7 57 IPR001005 -
Bisa03g0872 223 CDD SANT 10 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0872 Bisa-ChrBisa03 11603680 11604620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0872 4 111 MYB Transcription Factor Family AT5G59780 64.815 7.68e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa03g0872 Myb_DNA-binding 7.2e-10 CL0123