Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0830 ATGTCGACCTCTGCGGCCTCTTTAGCCCTTCCTACCCTAAATTCCAAATCCCAAACTCTCTTCTCTTCCGGACATGCTATCTCTTCCGTTTCTCTCAGACTCAATTCCAAGCCCATATCTATCTCTGCTTCTTTCCTTCACTTCGACAGGGCTTCTCCGAGTTTTACATCTCATTTGGTCCCGAATGTCGCCCTTTCTTCTGAGTTCTACCAAGAAGAGGAAACCGCGAGTGAAGGAGACGAGCCTAGCATCTCCCCCGACTTCAAACTCTTCGTGGGTAATCTTCCTTTCAGCATTGACAGTGCCCAGCTCGCTGAATTGTTCGAAAGCGTCGGAGATGTACAGTTGGTTGAGGTAATTTATGATAAAATGACCGGAAGAAGCAGGGGATTTGGTTTTGTGACCATGTCTTCTGCTGAAGAAGTTGAAGCTGCTACTAAACGATTCAATGGCTATGAATTGGAGGGAAGGGCATTGAGAGTAAATTCCGGGCCCCCTCCGCCTCGCAGGGAAAATTCCCCTTTTAGAGGTTCCAGAGGTGGTTCTGCTTCAGGCAGTGGAAACCGAGTACATGTGGGTAATCTTGCATGGGGGGTTGATAATGTGGCACTTGAAACGTTGTTTAGCGAGCTAGGAAATGTTTTGGAAGCAAAGGTAATCTATGACAGGGAAACTGGAAGATCAAGAGGATTTGGATTTGTGACTTACAGTAGCGCTGAAGAGGTTAACAGTGCTATTGAGTCCTTAAATGGGGTGGACTTGAGTGGCAGACCTATTCGAGTCTCATTAGCGGATGCTAAGCCAAGCCGTCAATTTTGA 819 0.4701 MSTSAASLALPTLNSKSQTLFSSGHAISSVSLRLNSKPISISASFLHFDRASPSFTSHLVPNVALSSEFYQEEETASEGDEPSISPDFKLFVGNLPFSIDSAQLAELFESVGDVQLVEVIYDKMTGRSRGFGFVTMSSAEEVEAATKRFNGYELEGRALRVNSGPPPPRRENSPFRGSRGGSASGSGNRVHVGNLAWGVDNVALETLFSELGNVLEAKVIYDRETGRSRGFGFVTYSSAEEVNSAIESLNGVDLSGRPIRVSLADAKPSRQF 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0830 272 SUPERFAMILY RNA-binding domain, RBD 81 188 IPR035979 GO:0003676
Bisa03g0830 272 SMART rrm1_1 89 162 IPR000504 GO:0003723
Bisa03g0830 272 SMART rrm1_1 189 262 IPR000504 GO:0003723
Bisa03g0830 272 CDD RRM2_NsCP33_like 189 264 - -
Bisa03g0830 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 188 266 IPR000504 GO:0003723
Bisa03g0830 272 MobiDBLite consensus disorder prediction 156 187 - -
Bisa03g0830 272 PANTHER OS02G0815200 PROTEIN 25 268 - -
Bisa03g0830 272 Gene3D - 186 272 IPR012677 -
Bisa03g0830 272 Gene3D - 64 185 IPR012677 -
Bisa03g0830 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 166 IPR000504 GO:0003723
Bisa03g0830 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 260 IPR000504 GO:0003723
Bisa03g0830 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 160 IPR000504 GO:0003723
Bisa03g0830 272 SUPERFAMILY RNA-binding domain, RBD 186 270 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0830 Bisa-ChrBisa03 11008766 11010817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0830 190 272 Eukaryotic Initiation Factors Gene Family AT1G71770 33.735 3.70e-08 52.4