Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0826 ATGATTACGTTTATGGATTCGAAGGAGAAATTGAAAGAGGTCGACAAGTGTTTGGATCCTCAGCTATGGCATGCTTGTGCCGGCGGGATGGTTCAAATGCCACCGGTGAAGACTAAGGTTTTCTACTTCCCTCAGGGTCACGCAGAGCATGCATGTGGACCCGTGGACTTCAGGGCTTGCCCCAAGGTTCCGCCTCAAATTCTATGCAGAGTCGCAGCTATCAAATACATGGCTGATCCTGAGACAGACGAGGTCTATGCCGCAATTAGGCTTATTCCTTTGAATGCAAATGAGGCTGATTATGACGATGATCGTATTGGGGGAGTCAATGCTTCTGAAACTCAAGGTAAACCCGCTTCATTTGCAAAAACTTTGACACAGTCGGATGCCAACAATGGCGGTGGGTTTTCTGTTCCTAGATATTGTGCAGAGACAATTTTTCCTCGTTTAGATTACTCTGCGGATCCCCCTGTTCAAACCATACTTGCCAAAGACGTTCATGGAGAAACATGGAAATTCAGGCACATTTACAGGGGCACACCGAGGCGGCATCTTTTGACGACTGGGTGGAGTACTTTTGTGAATCACAAGAAGCTTGTTGCTGGGGATTCAATTGTGTTCTTAAGAGCAGAAAATGGAGATCTCTGCGTTGGAATTCGGCGAGCTAAGAGGGGAATGGGTGGTGGACCTGAACTTTCATCAGGGTGGAATCCGGGAGGCGGAAATTGTCATGTACCTTATGGAGGATTTTCGGCATTCTTGAGAGAAGATGATTGCAAACTATTAAGAAATGGCAATAGCAATGCATTGAGCTCAAGTGGCAGCATGATGGGAAAAGGGAAAGTGAGGGCCGAAGCAGTTGTTGAAGCTGCAACTCTTGCTGCCAAAGGCCAGCCTTTTGAGGTTGTTTATTACCCGCGGGCAAGTACTCCAGAGTACTGTGTGAAGACCTCGTTGGTTAAAGCAGCACTGCAGATTAGGTGGTGTTCTGGAATGAGGTTCAAGATGGCCTTTGAAACCGAGGATTCCTCGCGGATAAGCTGGTTCATGGGAACTATATCTTCAGTTCAAGTTGCTGATCCCCTTCGCTGGCCAGATTCACCTTGGAGGCTTCTCCAGGTTACATGGGACGAGCCAGATTTACTTCAAAACGTGAAAAGGGTGAGTCCGTGGCTGGTTGAATTGGTATCAAACATGCCTGCCATCCATCCCTCCTCCTTCCCACCACCACTGAAGAAAATGAGATTGCCTCAACACCCAGATTTTCCCTTTGACGGCCATATTCCTGTGCCAACATTCCCCACCAACCTTCTAGGGCCTAGCAGTCCCTTTAATTATCTACCCGACAGTTCTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTCTATCCTTATCGGATCTACACCCTAACAAACTGCAGTCAGGTCTATTTTCGGCTGGTTTCCCGCCACTTGATCACACTGCTTCACCTCTGAGGATCTCTAATAACCCCTCAGTGAAAAAGCCCAGCATGAGTGAGAACGTCTCTTGCTTACTATCTATGGCAAGTTCTACTCAGTCTTCAGAGAAACGGGATGAAGTGAAGACACCCCAGCTTGTGCTTTTTGGCCGAACTATACTTAGCGAGCAGCAGATCTCCCTTAGCTGTTCTGGTGATACCACCTCCCAAGTTCTTACAGAAAATAGTTCATCAGATGGTAATGCTGATAAATTGACCAAGTTTTCTGACGCTTCTGGATCTGCTCTTCATCGGCAACGTCTGCGAGAACGCTCCTCCTGCAGGAGGCTCCCATGTTATAAGGATAACCGCCAAGAAATTGAGGCAAATTTAGAGACCGGTCACTGTAAAGTTTTTATGGAATCAGAAGACGTAGGTCGCACTATGGACCTCTCGTTGCTTGGGTCTTATGATGAATTGTATAGGAAGCTGGAAAGCATGTTTGGCCTAGAAAAATCTGAAATGGTAAGCCATGTGCTATACCGTGATGTAACCGGGGCAGTCAAACACATTGGAGATGAACCATTCAGTGACTTTACCAAAACAGCCAGGAGGTTGACGATTCTAATGGATTCCAGCAGCGACAACATATGA 2100 0.4724 MITFMDSKEKLKEVDKCLDPQLWHACAGGMVQMPPVKTKVFYFPQGHAEHACGPVDFRACPKVPPQILCRVAAIKYMADPETDEVYAAIRLIPLNANEADYDDDRIGGVNASETQGKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGMGGGPELSSGWNPGGGNCHVPYGGFSAFLREDDCKLLRNGNSNALSSSGSMMGKGKVRAEAVVEAATLAAKGQPFEVVYYPRASTPEYCVKTSLVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTISSVQVADPLRWPDSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPAIHPSSFPPPLKKMRLPQHPDFPFDGHIPVPTFPTNLLGPSSPFNYLPDSSPAGMQGARHAHYGLSLSDLHPNKLQSGLFSAGFPPLDHTASPLRISNNPSVKKPSMSENVSCLLSMASSTQSSEKRDEVKTPQLVLFGRTILSEQQISLSCSGDTTSQVLTENSSSDGNADKLTKFSDASGSALHRQRLRERSSCRRLPCYKDNRQEIEANLETGHCKVFMESEDVGRTMDLSLLGSYDELYRKLESMFGLEKSEMVSHVLYRDVTGAVKHIGDEPFSDFTKTARRLTILMDSSSDNI 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0826 699 Pfam Auxin response factor 290 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bisa03g0826 699 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Bisa03g0826 699 SMART B3_2 121 223 IPR003340 GO:0003677
Bisa03g0826 699 FunFam Auxin response factor 328 401 - -
Bisa03g0826 699 MobiDBLite consensus disorder prediction 557 577 - -
Bisa03g0826 699 CDD B3_DNA 120 221 IPR003340 GO:0003677
Bisa03g0826 699 Gene3D - 119 223 IPR015300 -
Bisa03g0826 699 FunFam Auxin response factor 119 223 - -
Bisa03g0826 699 Gene3D - 612 699 - -
Bisa03g0826 699 Gene3D - 327 401 - -
Bisa03g0826 699 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Bisa03g0826 699 SUPERFAMILY DNA-binding pseudobarrel domain 115 224 IPR015300 -
Bisa03g0826 699 ProSiteProfiles PB1 domain profile. 615 698 IPR000270 GO:0005515
Bisa03g0826 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 693 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0826 Bisa-ChrBisa03 10972543 10974900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0826 14 699 B3 DNA Binding Superfamily AT4G30080 59.712 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa03g0826 B3 1.5e-21 CL0405