Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0807 ATGGGACATAGACATTTATATAGCATATCTCAGGTGTTTGAGAATGAGCATGACCAAAATTGGAATCTTATCCATACTGATCAACATTATGTGCAACTAGGTACGACTGGCACTTCAGAGAATGATCCTTTTATTTATCCTGTGGAAAATGTTGCTATAGATGGTAGCTCTTTCACTGCCCCTTGGAACAATGCCACAAGGTCAAATGGATATGCATCCTCAAGTATCAACATTGAAGTACCCCCTCATCAATCAGATGTAGCTGGATCTTCTCGTGATCAGTTTATGCATTCATCAAATGCTGGAGCCTTTTTTGGAGTTTCTGAAAACTATGCTCACCAGCTGCCTTCTTCCAATTATGATAGACAGGCGTTTCAAATTGCTGATGGTGGATTTATTGATCTTACAATGGGAAGCGGAAGAGGGCCTCACAAGCGGAAGAGCCCTGGAATTCCTTCAGTCTGTGAGAGAGGCAGTACAAGCAGATACATTAATGCCGGAAGTTCAACTGATCTTCCTATATCCTCAGAAATAAGGCAGGAGAAGCCAAGCATGGATTCTCAATATATGCCTTGGGATCATGTAACTATGCCACCCACCTTCAGAGGCAGTGGCCTTTCAATCAGGGGTGAGGGTTCTTTAAGGAATGTGAGAAGCCGTTCTACACTTGATTTAGAATCCAACCTTGCTAGGACCCATTTGTCCAGCAATCATTCACACAACTACCCTACTGGCCCGCCCATTGACCATTCTAGCACAGTGGATCTTCCTGGTCCTGGTCAGAGTTCTAGTACTATGACGACGGATTGGAGCCAAATGAACATATCAAGTGCTCATAGGAGGGTTTTATTATCTGAATCAGGTGGATATAGTCATGACACAAGCCACTTACTTGTTGGAAGTGGTGCTAGTAATGGTTCAATAGATATTGGGGGTTACCATCAGGAATATAATACAAGCATAAATCCTACTGTTCCTCAAAACTTTCATGGTAATCTCACTCACGGTGCTAGGGGAGTTCGCAGTAACTATTCTCAAAGATCTACTCCAACCCCAACTTTTAGGGCCTCTTCAAGCTCGCGCTTGGGACACATGGTGCCTTCAGATGATGGATTGCACATGGTAGCTGAAGGTTACTCTTCTAGACATCCAAGACCATTGACCACTATTGGCTGGCGGAATAGTGACAGAAATGGGAGGTCAAGGATATCTGGTGATAGACATCGATCGTTGGCTGATGAGGCTGGTCTCCATGATCGATTTTCTTCTGAGGGTTTCATGGTTGTTGATCGTGCACCACTATATGGTTCTAGAAATACGTTTGATCAGCATAGAGACATGAGGATGGACATAGACAACATGAGCTATGAGGAACTACTTGCACTTGGAGAGAGGATTGGTGATGTTAGCACAGGATTGGCTGAGAATTTGATTTCCAAGTGTTTGACAGAATCAGTATATTGTTCATCTGAGCAATGTCAAGAGGAAGGAAGTTGTGTAATCTGTCTGGAAGAGTATAAGGACTTGGATGATGTTGGGACATTGAGAACATGCGGCCATGACTACCATGTGAGCTGCATTATAAAGTGGTTATCCATGAAGAACCTATGTCCAATCTGCAAGGCTTCTGCTCTTCTTGATAATATGAAGGATAAGTAA 1659 0.4316 MGHRHLYSISQVFENEHDQNWNLIHTDQHYVQLGTTGTSENDPFIYPVENVAIDGSSFTAPWNNATRSNGYASSSINIEVPPHQSDVAGSSRDQFMHSSNAGAFFGVSENYAHQLPSSNYDRQAFQIADGGFIDLTMGSGRGPHKRKSPGIPSVCERGSTSRYINAGSSTDLPISSEIRQEKPSMDSQYMPWDHVTMPPTFRGSGLSIRGEGSLRNVRSRSTLDLESNLARTHLSSNHSHNYPTGPPIDHSSTVDLPGPGQSSSTMTTDWSQMNISSAHRRVLLSESGGYSHDTSHLLVGSGASNGSIDIGGYHQEYNTSINPTVPQNFHGNLTHGARGVRSNYSQRSTPTPTFRASSSSRLGHMVPSDDGLHMVAEGYSSRHPRPLTTIGWRNSDRNGRSRISGDRHRSLADEAGLHDRFSSEGFMVVDRAPLYGSRNTFDQHRDMRMDIDNMSYEELLALGERIGDVSTGLAENLISKCLTESVYCSSEQCQEEGSCVICLEEYKDLDDVGTLRTCGHDYHVSCIIKWLSMKNLCPICKASALLDNMKDK 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0807 552 CDD RING-H2_RNF24-like 499 544 - -
Bisa03g0807 552 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 464 545 - -
Bisa03g0807 552 MobiDBLite consensus disorder prediction 321 363 - -
Bisa03g0807 552 MobiDBLite consensus disorder prediction 234 248 - -
Bisa03g0807 552 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 123 545 IPR045191 GO:0061630
Bisa03g0807 552 MobiDBLite consensus disorder prediction 154 170 - -
Bisa03g0807 552 MobiDBLite consensus disorder prediction 234 268 - -
Bisa03g0807 552 MobiDBLite consensus disorder prediction 338 363 - -
Bisa03g0807 552 SUPERFAMILY RING/U-box 489 545 - -
Bisa03g0807 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 466 545 IPR013083 -
Bisa03g0807 552 Pfam Ring finger domain 498 541 IPR001841 -
Bisa03g0807 552 SMART ring_2 499 540 IPR001841 -
Bisa03g0807 552 MobiDBLite consensus disorder prediction 139 170 - -
Bisa03g0807 552 MobiDBLite consensus disorder prediction 386 407 - -
Bisa03g0807 552 ProSiteProfiles Zinc finger RING-type profile. 499 541 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0807 Bisa-ChrBisa03 10675823 10678311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0807 1 551 C3H Transcription Factor Family AT2G37150 41.873 1.76e-116 354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0807 03 10675823 10678311 Bisa03g0807 03 10675823 10678311 ECH