LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g0711	ATGGCAGCAGCGAGACGGCTTCGGGACCTGCAAGCTCAACCGGCGAACAGGATCTGCGTCGATTGCTCTCAGAAGAATCCCCAATGGGCTTCTGTTTCTTACGGAGTTTTTATGTGCTTGGAGTGCTCCGGCAAGCACCGTGGCCTCGGTGTTCATATATCCTTCGTTCGATCCGTCACCATGGATTCCTGGTCTGAAATCCAATTAAAAAAGATGGACGCAGGCGGTAACGAGAAACTCAATGCCTTCCTTGCCCAGTATGGCATTGCTAAGGAGACTGATATCGTCACCAAATACAATACCAATGCGGCTAGCATTTATAGGGATAGAATTCAGGCTATCGCAGAGGGACGACCATGGCGGGATCCACCGGTCGTCAGGGAGAACTTTGGCCCTGGGAGGAGTAAGCCTCCCTTGGCGTCGAAAAGTGCGAAAGATGGAGGGTGGGATAATTGGGATAACGATGACGGGTTCAAATCTTCCCATGACTTCAAGCGCAACATGTCTATGGGAGATATTGGAAACTGCAATGCAGGTTCAGCTGGTAGCATACCCCAGAGGTCGAGGTCGACGGAGGATATCTTGACGCGGGCGCAATATGAAGCATCCGCTGCGAACAAGGACAACTTTTTTGCTCAGAAGGTAGCGGAGAACGAATCACGACCGGAAGGTCTTCCACCCTCGCAAGGAGGCAAATACGTTGGTTTTGGATCTAGTCCCGCTCCTTCCCAGATGAATAACCAGCAAAATGATGTCTTCTCCGTCGTTTCGCAGGGATTTGGTAAGTTATCTCTGGTTGCTGCCTCTGCGGCTCAGTCTGCTGCTAATGTCGTTCAGGCTGGCACTAAAGAAATCACTACTAAGGTAAAAGATGGTGGTTATGATCACAAGGTCAATGAAACGGTCAATGTTGTCACTCAGAAGACATCAGAGATAGGGCACAGGACATGGGGGATCGTGAAGGGGGTCGTGGCATTGGCTACACAGAAGGTTGAGGAGTACGCCAGAGAGGGCAACAATTGGAATAATGATAATTGGCAGCGAAATGAAAACGATAGAAATGGCTGCAATCAAGAATATAATCAAGAGAATAAAGGTTGGCATTCTTCTACTGGAGGAGGACAACCTTCCGATGGGCAAATTAATACTCACAACTCAAGCTCTTGGGATGATTGGGACCGAGATACTAAGAAAGTAGAACCAGCGAGAGGATCAGTTCCCATTTCATCAGATGGGAATTTTAATACTTACAGTTCAAGCTCCTGGGATGATTGGGACAACAACTATACCAGGAAGAAAGAACCAGCCAAAGGATCAGCTCCCCCTCCGTCAGGTGGGAATTTTAATAAATACAGTTCTAGCTCCTGGGATGATTGGGACAAAAATGATACTAAGAAGAAAGAACCAGCTAAAGGATCAGCTCCTCGTAACGATGACGGTTGGGCTGGCTGGGATGATGCCAAAGATGATGGATATGATAATTCCTATGGAAGTGCATCAAATACGAAAGCAGTTGGTCCTAATGGAAAGTCTGGTGACAACTGGACAGGAGGAGGCTTTCTTTGA	1566	0.4789	MAAARRLRDLQAQPANRICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQLKKMDAGGNEKLNAFLAQYGIAKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVRENFGPGRSKPPLASKSAKDGGWDNWDNDDGFKSSHDFKRNMSMGDIGNCNAGSAGSIPQRSRSTEDILTRAQYEASAANKDNFFAQKVAENESRPEGLPPSQGGKYVGFGSSPAPSQMNNQQNDVFSVVSQGFGKLSLVAASAAQSAANVVQAGTKEITTKVKDGGYDHKVNETVNVVTQKTSEIGHRTWGIVKGVVALATQKVEEYAREGNNWNNDNWQRNENDRNGCNQEYNQENKGWHSSTGGGQPSDGQINTHNSSSWDDWDRDTKKVEPARGSVPISSDGNFNTYSSSSWDDWDNNYTRKKEPAKGSAPPPSGGNFNKYSSSSWDDWDKNDTKKKEPAKGSAPRNDDGWAGWDDAKDDGYDNSYGSASNTKAVGPNGKSGDNWTGGGFL	521

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g0711	521	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED	1	403	IPR044519	GO:0005096\|GO:0016192
	Bisa03g0711	521	SMART	arf_gap_3	4	120	IPR001164	GO:0005096
	Bisa03g0711	521	MobiDBLite	consensus disorder prediction	494	509	-	-
	Bisa03g0711	521	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	4	120	IPR001164	GO:0005096
	Bisa03g0711	521	MobiDBLite	consensus disorder prediction	339	387	-	-
	Bisa03g0711	521	MobiDBLite	consensus disorder prediction	408	425	-	-
	Bisa03g0711	521	SUPERFAMILY	ArfGap/RecO-like zinc finger	5	110	IPR037278	-
	Bisa03g0711	521	Gene3D	Arf GTPase activating protein	1	123	IPR038508	-
	Bisa03g0711	521	FunFam	ADP-ribosylation factor GTPase-activating protein	1	129	-	-
	Bisa03g0711	521	MobiDBLite	consensus disorder prediction	456	474	-	-
	Bisa03g0711	521	MobiDBLite	consensus disorder prediction	122	154	-	-
	Bisa03g0711	521	Pfam	Putative GTPase activating protein for Arf	5	94	IPR001164	GO:0005096
	Bisa03g0711	521	CDD	ArfGap_ArfGap1	3	117	-	-
	Bisa03g0711	521	MobiDBLite	consensus disorder prediction	339	521	-	-
	Bisa03g0711	521	PRINTS	HIV Rev interacting protein signature	56	77	IPR001164	GO:0005096
	Bisa03g0711	521	PRINTS	HIV Rev interacting protein signature	35	52	IPR001164	GO:0005096
	Bisa03g0711	521	PRINTS	HIV Rev interacting protein signature	16	35	IPR001164	GO:0005096
	Bisa03g0711	521	MobiDBLite	consensus disorder prediction	217	247	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g0711	Bisa-ChrBisa03	9438814	9441553	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g0711	5	87	C2H2 Transcription Factor Family	AT4G05330	50.000	5.51e-22	95.5

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa03g0711	03	9438814	9441553	Bisa07g2086	07	49271051	49273972	CCT
	Bisa03g0711	03	9438814	9441553	Bisa03g0711	03	9438814	9441553	ECH