Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0701 ATGAATCACTGCGTTCCAGATTTCGAAATCCAAATGGATGATGAATACCAAATACCCTCATCTTCTGGTTCTGGTGTGCCTCACTCTAAAAAGCCCTCCATGCCAGAAGACGATATCATGGAGCTGTTATGGCAAAACGGCCAGGTCGTGATGCAGAGCCAGAATCAACGACCGCTCAGGAAAACGCCGCCGGACAGGTACACCGACGGCGTAATTCCTTCCGGACCATCGACGGCGAGGGAGATTCGACCCTCTCAACAAGAGCAAAACTATCACAACCACCATCTCTTCATGCAAGAAGATGAAATGACATCCTGGCTTCACTATCCAATCGTCGATGATCCTCCCTTGGATCATAATTTCTGCGCCGACATAATCTACACTCCGCCACCACCGCCGCCTCCGCCACCGCAGCCCACTGTCAACAACAGCAACAGAAATAACAACAGTACCATGCAAAATCTTGTCCGTACAAATCAAGTAACAGAACTCTGGCAGCCGTCGAGGTCCGTTGCTCCTCGGCCGCCGATTCCGCCCCCGAGGAAACCAGAGCAGGTGCACACAATGATACCGAACTTCGCGCACTTCTCTAATCACAATGCGAGATTTGAACCTGCAGAGCCGTCGAGTTCGAAGACCGCGGTGAAAGAATCGACGGTGGTGGATTCATGCGACACTCCGGCAGTGGTGGCGTCGGCTTCCAGAGTCTCAGAGACTATCAGAAACTCCGCGGAGGCAACAGAAGGCGGTGCAACTCGTAGAACTGTGAGCACGGCCGGAGTTGCGGCGACGTCCACCGGCGGAGAAACGGGAGGGAGGGAGGCCACAACGTGTGAGATGACAACCACGTCATCGCCGGGAGGTTCGAGCGGTAGTGATGAACCGGCAAGGAGGCCGCCGGCTGAAGATCGGAAGCGGAAGGGGCTGGAGGCGGAAGACTCCGAGTGTCACTGCGAGTTAAAGGATGTTGATTTTGAATCCGCTGAAGCAAAAAGACAAATCTGTGGGTCAACATCGACAAAGAGATCTCGTGCTGCAGAGGTCCACAATCTCTCGGAGAGGAGGCGTCGAGATAGGATTAATGAGAAGATGAAAGCGTTGCAAGAACTTATACCTCGTTGCAACAAGTCTGACAAAGCTTCAATGCTGGACGAAGCAATTGAATACTTGAAGTCGCTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCGATGATGTTTCCTGGGATCCAGCAGTATATGCCGGCAATGGGGATGGGGATTGGAATGGGGATGGAGATGGGAATGAATAGGCCATTAATGCCATTTCCCAATATGTTAGCTGCTTCAGCTTTGCCAGCAACAGCAAGTGCAGCTGCAGCTGCAGCTACTGCTCACTTGGGAACAAGGTTCCCTATGCCTCCTTTCCCTGATTCATCCAGAATGCCACCACCACCACCACCAAATCAATCAGATAACAGTATGCTTTCTTCACGTCTCATCCCTGATCCCAATCAGTCACGCATCCCAAACTTCACTGATCCTTATCACCAATACTTTGGTCCCCACCAGATGCATCTACAGTTCATGCAGGCAATGAACAACCCAAATGTCAGCAAGCGGAGTACCAGTAAGAGCCATGAAAACACAGAAAATAATCAGTCAGGTATGAATATGATGCTGTTTCTTAATAATCTGAAAATTAAATGTCCTGTCTAG 1710 0.5076 MNHCVPDFEIQMDDEYQIPSSSGSGVPHSKKPSMPEDDIMELLWQNGQVVMQSQNQRPLRKTPPDRYTDGVIPSGPSTAREIRPSQQEQNYHNHHLFMQEDEMTSWLHYPIVDDPPLDHNFCADIIYTPPPPPPPPPQPTVNNSNRNNNSTMQNLVRTNQVTELWQPSRSVAPRPPIPPPRKPEQVHTMIPNFAHFSNHNARFEPAEPSSSKTAVKESTVVDSCDTPAVVASASRVSETIRNSAEATEGGATRRTVSTAGVAATSTGGETGGREATTCEMTTTSSPGGSSGSDEPARRPPAEDRKRKGLEAEDSECHCELKDVDFESAEAKRQICGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGIGMGMEMGMNRPLMPFPNMLAASALPATASAAAAAATAHLGTRFPMPPFPDSSRMPPPPPPNQSDNSMLSSRLIPDPNQSRIPNFTDPYHQYFGPHQMHLQFMQAMNNPNVSKRSTSKSHENTENNQSGMNMMLFLNNLKIKCPV 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0701 569 MobiDBLite consensus disorder prediction 164 184 - -
Bisa03g0701 569 FunFam Basic helix-loop-helix transcription factor 339 402 - -
Bisa03g0701 569 CDD bHLH_AtPIF_like 344 407 IPR047265 -
Bisa03g0701 569 MobiDBLite consensus disorder prediction 473 488 - -
Bisa03g0701 569 PANTHER TRANSCRIPTION FACTOR PIF3 26 495 IPR044273 GO:0003700|GO:0006355
Bisa03g0701 569 MobiDBLite consensus disorder prediction 230 313 - -
Bisa03g0701 569 MobiDBLite consensus disorder prediction 230 291 - -
Bisa03g0701 569 Coils Coil 350 370 - -
Bisa03g0701 569 SMART finulus 350 399 IPR011598 GO:0046983
Bisa03g0701 569 MobiDBLite consensus disorder prediction 125 151 - -
Bisa03g0701 569 MobiDBLite consensus disorder prediction 467 505 - -
Bisa03g0701 569 MobiDBLite consensus disorder prediction 52 86 - -
Bisa03g0701 569 MobiDBLite consensus disorder prediction 126 141 - -
Bisa03g0701 569 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 344 393 IPR011598 GO:0046983
Bisa03g0701 569 MobiDBLite consensus disorder prediction 13 35 - -
Bisa03g0701 569 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 410 IPR036638 GO:0046983
Bisa03g0701 569 MobiDBLite consensus disorder prediction 296 313 - -
Bisa03g0701 569 Pfam Helix-loop-helix DNA-binding domain 348 394 IPR011598 GO:0046983
Bisa03g0701 569 Gene3D - 339 402 IPR036638 GO:0046983
Bisa03g0701 569 MobiDBLite consensus disorder prediction 489 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0701 Bisa-ChrBisa03 9338758 9342282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0701 1 399 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.727 2.83e-70 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa03g0701 HLH 7.2e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0701 03 9338758 9342282 Bisa07g2065 07 48959132 48964138 CCT
Bisa03g0701 03 9338758 9342282 Bisa03g0701 03 9338758 9342282 ECH