Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0658 ATGAAAGCGCACCCAGCTTTTTCCTTTGAAAGATCAACTGCAAAGCAATTCAATAGCATGGGGATGTCTGGAGCACTGTCTTCATCCTTGCCAGTCCACCCAACGCCCCTTGAAGAGACATCTCTCAAGTTACCTGATTCTCAGCAGGCTTTTGTAGGGAAAGAGCCCATGACAAAACCTCTCACTCATTCAAGTCATTTAAATTCCAGCGGAGTAGTTGGACACATGTTTTCATCGTCCCCTGGATATTCAACTGATCTTCATCACTCATCCCTTTCACCTCATGAACACTCAAGAAATGCCCATTTTATTTCGCAGTCATCAAGTAAAATGACATCATTGCCATTTTCATATTCTTCAAGTGCTGGACCACTTCCTTCTACAGCATCAAGTTGTTATTCCAAAGAAAGCAGTGCTTCTTGGGATACAGATTCCCTGCCAAGCTTTCTTGATTTTCCTGTAAATACCTCCATTGAGAATAATCAAGTAGAAAGCAGTGCCTGCGATATAATGGCATCTGAGGAGTATAGTAAGAGAAATGATTGGCAAGAGTGGGCTGACCAGCTAATCAGTGATGATGACACTTTGACTTCTAATTGGAATGACATTCTTGTTGACACCAGCATTCATGATCTTGAACCAAAGGTGACATGCCAAGTTCCAAAATCATCTTCACAATTTCCAGGACAACAGTCCCAAGGTCATCAGCAGCTTCCTGCTTCATTGGGAGAAAATCATGTTGGTGCTCCACCCTCTTCCTCAGCAAATTCTGCTCCTGCCAAGCCACGAATGCGTTGGACACCAGAGCTTCATGAGGCCTTTGTGGAGGCTGTCATCCAACTTGGTGGGAGTGAAAGGGCAACCCCTAAGGGTGTTTTGAAGCTCATGAAAGTTGAAGGCTTAACAATATATCACGTTAAAAGCCACTTGCAGAAATATAGGACTGCTAGATATAGACCGGAGTCATCTGAAGGATCCTCAGAGAAAAAACTAACTCCCATCGAAGAGATGTCATCTCTAGACTTGAAAACTGGTATTGAGCTCACTGAAGCTCTGAGAATGCAGATGGAAGTTCAGAAGCGGCTGCATGAACAGCTCGAGATTCAAAGGAATTTACAGTTGCGGATTGAAGAACAAGGAAGGTATCTCCAGATGATGTTTGAGAAGCAATGCAAATCCGGCACTGAAAAGTTTAAGGCGGCATCATCTGCTATGGATAGCCCCTCTGGAGTTTCATCAGATGCTATTAAAGATTCTTCAGCCAAAAGTGAAGTTGAAGCCTCCCAAGTGGACCATTGTCAGTCAGGAACCGAACAAGATAAAGGCAACACCACATCAAAAGAAAGTTCAACGAAAGCGAGCGAGGAGCATAATGCTCCAGAAAGCCAAACTCTTGACAATCCTAAGCAACATGCTAGTGAAGATAGTGCTCAGCCATCAAAGCGTCAGAGGACGGACGAGTAA 1464 0.4392 MKAHPAFSFERSTAKQFNSMGMSGALSSSLPVHPTPLEETSLKLPDSQQAFVGKEPMTKPLTHSSHLNSSGVVGHMFSSSPGYSTDLHHSSLSPHEHSRNAHFISQSSSKMTSLPFSYSSSAGPLPSTASSCYSKESSASWDTDSLPSFLDFPVNTSIENNQVESSACDIMASEEYSKRNDWQEWADQLISDDDTLTSNWNDILVDTSIHDLEPKVTCQVPKSSSQFPGQQSQGHQQLPASLGENHVGAPPSSSANSAPAKPRMRWTPELHEAFVEAVIQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGSSEKKLTPIEEMSSLDLKTGIELTEALRMQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGTEKFKAASSAMDSPSGVSSDAIKDSSAKSEVEASQVDHCQSGTEQDKGNTTSKESSTKASEEHNAPESQTLDNPKQHASEDSAQPSKRQRTDE 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0658 487 FunFam Myb family transcription factor 260 318 - -
Bisa03g0658 487 Pfam MYB-CC type transfactor, LHEQLE motif 346 393 IPR025756 -
Bisa03g0658 487 MobiDBLite consensus disorder prediction 426 449 - -
Bisa03g0658 487 SUPERFAMILY Homeodomain-like 259 315 IPR009057 -
Bisa03g0658 487 MobiDBLite consensus disorder prediction 219 263 - -
Bisa03g0658 487 NCBIfam myb-like DNA-binding domain, SHAQKYF class 261 315 IPR006447 GO:0003677
Bisa03g0658 487 MobiDBLite consensus disorder prediction 84 104 - -
Bisa03g0658 487 MobiDBLite consensus disorder prediction 398 487 - -
Bisa03g0658 487 MobiDBLite consensus disorder prediction 398 418 - -
Bisa03g0658 487 MobiDBLite consensus disorder prediction 456 474 - -
Bisa03g0658 487 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 234 476 IPR044848 GO:0003700
Bisa03g0658 487 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 258 318 IPR017930 -
Bisa03g0658 487 MobiDBLite consensus disorder prediction 219 240 - -
Bisa03g0658 487 Gene3D - 260 319 - -
Bisa03g0658 487 Pfam Myb-like DNA-binding domain 263 314 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0658 Bisa-ChrBisa03 8556650 8560088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0658 27 426 G2-like Transcription Factor Family AT4G28610 49.148 2.27e-106 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Bisa03g0658 Myb_DNA-binding 5.3e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0658 03 8556650 8560088 Bisa07g2019 07 48227180 48230927 CCT
Bisa03g0658 03 8556650 8560088 Bisa03g0658 03 8556650 8560088 ECH
Bisa03g0658 03 8556650 8560088 Bisa07g2019 07 48227180 48230927 ECH