Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0626 ATGCGAAACCTTTCAGTTCCCCCTGGTTTTAAATCCCTTACTTCTTTCACCCTAAAAAGGGTCGAAAAGGTTAAAGAGGCTGATAAATCTCAACGGGAGCCAATGTGCATGGAAAGTATATATGAGATGAATGACACTGCTGCATATAAGTCAATTCTTAGGCCTCGTCCATGGATACTTTTTGATCAAAGCAACCATGACCCTGAGAAATCTGACACGGAGCATCTTCCTAAGGATCTTCCTTCAAATGCTTTTCGTCCAAAAGGGGTTATCCTAGGTTGTCCAGACTGCAGTGATTGTCTGAAGGTAACAGCAAGTTGGTGCCCGGAGAATGCAAGAAGAGATGTCCTTGAAGAAGCTCGTATTTTCCACCCAACAGAAGAGGAATTTAAAGACACACTTAAATACATTGCAAGCATACATTCCGAAGCAGAGCCTTATGGAATTTGTCGCATCATTCCTCCTCCTTCCTGGCAACCACGATGTCTTCTTCAGGAAAATAACATATGGGAAAGCTCCAAATTGATTACCCAGATTCAGCGCATTGATGGGCTCCAAGTTCAGTGCCAACAAGAAATTATGGCCAAATCTTCTGAAAATACAAAGACCAAGAACAGAATAGGCCTAAGAGTAGCTTTGGACTCTCAGTCTGGTAATGGAAACCTCCATAATGTTAACGACTTTGAGTCTAAACGCGGTCCTACATTCACTCTCAGTACATTTAAGAAATTTGCTGATGATTTCAAGGCCCTGTACTTCAACTGTGACGATAAGATCATGGGTTCTGATAAAAAGTGGGAGCCAACTGTGGAGAATCTTGAGGGTGAATATGGACGGATTGTTCAGAATCCAACAGAAGAAATTGAGGTGTATTATGGTAAGAATTTGGAGGCTGGAGATCTGAGCAGTGGATTTCCAGTGGTATCCGATCCTCTGGAGTCATTCAATTATCCTGAATATATGAAATCTGGATGGAACTTAAATAATATGCTTACACAGACCGGTTCTCTTCTTTCTTTTGAAAGCTCTGAGGTTTCATGCAAATTTGCTCCTAAGATTCATGTTGGAATGTGCTTTTCTTCATTCAACTGGAAAGTAGAAGATCACCAGTTCTACTCATTGTGTTACATGCACTTGGGTGAACCTAGAGTCTGGTATGGCATCCCTGGAAGATTTGCTGCCAACTTCAAAGCAGTAATGAAGAAGTATCTTCCAGTTTTTGCAGAACAGCCTGACTTGCATGAAAATTTGGGGATGCAGTTATCCTCCACCATATTGAAGTCAGAGGGTATACCGGTCTATCGCTGTGTTCAGTATCCTCGGGAGTTTGTTCTTGTCTTCTCAGGAGCATATCATTCGGGATTTGATTGTGGTTTCAACTGTTCTGAATCAGTCAGTTTTGCTCCTCTTGAGTGGCTGCTTCATGGACAGAATGTTGTCGAGTTCTATTGTGAACAAAGAAGAAAGACATCAATATCATATGATAAGCTGTTGCTTGGGGCAGCAAGGAAAGCTGTTAGGGCACAATTTGAAATTGAATTTTGCAGGCTGAGCACCCCAGATAATTTAACATGGAAAGATGCCTGTGGTAGGAATGGGATCTTAACAAAAGCTCTGGATTCATGCCTGAAGAGTGAACGTTTAAAGAGGGAATTTCTCTGCACTTCTCTGAAATCACGGAGAATGGAAGATGGTTTTGATGCCACTTGCAAAAGGGAATGCATTATATGTCTGCGTGATCTACATTTATCTGCTGCAGGTTGTCTATGTTCAAAGAACAAATTTGCATGTCTTAATCATGTGAAGCAACTCTGTTCTTGTGCTTGGAGCAACAAATTTATTCTCTGCCAATATGAAATCATCGAGTTGAATGTTCTTTGTCTTGCTTTGGAGGGAAAATTAAGTGCAATTCACAGGTGGTCTAAAGAGGATCTTGGAATATCTCTGCATAAAAGATTGAAACAAACCCAGGGAAGTTCGAGTGTTTCATCAGCGTCTTCAGTAGCAAAAGCAGCAATATTGAATGCCATGAAACGGAAAAGAGATGCAGTTGAGTCTGAAGCTACAGGCATTGGTGGAATTTCTTCTGGCATTGAGCCAAAACTGAAGGCACCTTTACTACAAACAAAATTAGTAGGTGAGTTGAAGGAAAAACAGAAAACAGTCCGGCAACAATCTGCTACAACATGCATTCATAGAGGAATCTATTCTGCTTCTGGCATCAAATCTGATACAAAACAGAAAACAGTCCGGCAACAATCTGCTGCAACATGCATTCCTAGAGGAACCAATTCTGCTTCTGGCATCAAATCTGATACAAAGGCCCGTGCAGTCAGGTCTGAAGCTACAGGCATTGGTGGAATTTCTTCTGGCATCGAGCCAAAACTGAAGGCACCTTTACTTCAATCAAAATTAGTAGGTGAGTTGAAGGAAAAACAGAAAACAGTCCGGCAACAATCTGCTGCAACATGCATTCACAGAGGAATCAATTCTGCTTCTGGCATCAAATCTGATACAAAACAGAAAATAGTCCGGCAACAATCTGCTACAACATGCATTCACAGGGGAATCAATTCTGCTTCTGGCATCAAATCTGATACAGTCAGGTCCAAAATTCCAAATTTGGTAGAAAATGACCCAAAACCAAAAATATCTGGGGTCTTCTCGGGTGCAAATGCAACCCTAGGTTATATGGCTTTTCTGTCAGAAAACAAGTCACTTGATATTTCTTCAGATAGTTCATCTTCATCTTCAGAATCTGATGATGACACTTGA 2775 0.4115 MRNLSVPPGFKSLTSFTLKRVEKVKEADKSQREPMCMESIYEMNDTAAYKSILRPRPWILFDQSNHDPEKSDTEHLPKDLPSNAFRPKGVILGCPDCSDCLKVTASWCPENARRDVLEEARIFHPTEEEFKDTLKYIASIHSEAEPYGICRIIPPPSWQPRCLLQENNIWESSKLITQIQRIDGLQVQCQQEIMAKSSENTKTKNRIGLRVALDSQSGNGNLHNVNDFESKRGPTFTLSTFKKFADDFKALYFNCDDKIMGSDKKWEPTVENLEGEYGRIVQNPTEEIEVYYGKNLEAGDLSSGFPVVSDPLESFNYPEYMKSGWNLNNMLTQTGSLLSFESSEVSCKFAPKIHVGMCFSSFNWKVEDHQFYSLCYMHLGEPRVWYGIPGRFAANFKAVMKKYLPVFAEQPDLHENLGMQLSSTILKSEGIPVYRCVQYPREFVLVFSGAYHSGFDCGFNCSESVSFAPLEWLLHGQNVVEFYCEQRRKTSISYDKLLLGAARKAVRAQFEIEFCRLSTPDNLTWKDACGRNGILTKALDSCLKSERLKREFLCTSLKSRRMEDGFDATCKRECIICLRDLHLSAAGCLCSKNKFACLNHVKQLCSCAWSNKFILCQYEIIELNVLCLALEGKLSAIHRWSKEDLGISLHKRLKQTQGSSSVSSASSVAKAAILNAMKRKRDAVESEATGIGGISSGIEPKLKAPLLQTKLVGELKEKQKTVRQQSATTCIHRGIYSASGIKSDTKQKTVRQQSAATCIPRGTNSASGIKSDTKARAVRSEATGIGGISSGIEPKLKAPLLQSKLVGELKEKQKTVRQQSAATCIHRGINSASGIKSDTKQKIVRQQSATTCIHRGINSASGIKSDTVRSKIPNLVENDPKPKISGVFSGANATLGYMAFLSENKSLDISSDSSSSSSESDDDT 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0626 924 ProSiteProfiles JmjC domain profile. 319 484 IPR003347 -
Bisa03g0626 924 ProSiteProfiles JmjN domain profile. 120 161 IPR003349 -
Bisa03g0626 924 PANTHER LYSINE-SPECIFIC DEMETHYLASE 115 814 - -
Bisa03g0626 924 SMART cupin_9 319 484 IPR003347 -
Bisa03g0626 924 Pfam JmjC domain, hydroxylase 354 467 IPR003347 -
Bisa03g0626 924 Gene3D Cupin 105 468 - -
Bisa03g0626 924 Pfam C5HC2 zinc finger 574 624 IPR004198 -
Bisa03g0626 924 SUPERFAMILY Clavaminate synthase-like 235 506 - -
Bisa03g0626 924 SMART JmjN_1 119 160 IPR003349 -
Bisa03g0626 924 Pfam jmjN domain 122 154 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0626 Bisa-ChrBisa03 8101670 8112372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0626 5 649 JUMONJI Transcription Factor Family AT1G08620 48.071 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Bisa03g0626 JmjC 4.8e-33 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0626 03 8101670 8112372 Bisa03g0626 03 8101670 8112372 ECH