Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0621 ATGCCTATTGCTAGAGGTCAAACAGATACGACTTCAGTAAAATGTGTTGTCAACAGCATTTCTCGGTTTATTCACCTGGTTTCTTGCCAAACAGTGAAACCTATGCCTTTTCAGAAGAACTGTAATCATATGATTGGTGTGTTAAAGCATTTGAAACCAGTGCTTGATGATGTTGTAGACTACAAAATTTACTTAGATGAGAAACTACATAAAGAGTGTGAAGAATTGGATATTGCAGTTAATGAAGCTAGAGAGTTCATAGAAAAATGGAGCCCAAAGATGAGCAAGATTCTCAGTGTTCTGCGAAGTGGGTCATTGTTGATGAAAATACAGATCTCCTCAGTTGAGATTTGTCACATGATATTTAGATCACTGCAATCACCTCCGCCTACTTCAGTTTTGGCCAGTCTTCAGAACTATTTGCAGGAACTTAAATGTTTGAAAAAGGAACCAGCTGTAGGCTATATAGAAGAGGCATTGAGATATCAAAGGGAAAATATTGAACCTCACAATGAAAATATAAAGAATATTATTGAGTTGCTTGGGTTGAAATCAAATTTGGAAGTTTTCAAAGAAAGTATTGCTGTGGAAAAGGAAAGATTGGACGTTGAAGTCAATAAAGTGAAAGGGAAATTGGATGAAATTAATGAAATAGTGAATCTTGTCTGTAACATGCGTGATTATGCAATTAAAGTTGAGCGCTTTGAAGTCAAAAGTGGTGTTTCAATTCCTTCGTACTTCATCTGTCCATTATCATTGGAACTCATGATGGATCCTGTTATCGTGGCTTCAGGTCAGACATACGAGAGGTCATCCATCCAAAAGTGGCTTGACCTTGGGTTGATTGTTTGTCCCAAGACTCATCAGAGACTTACTCATACAAACCTCATTCCTAATTATACTGTCAAAGCTATGATAGCAAATTGGTGCGAGGAAAATAATGTCAAACTTCTGAGTAATTCTAAGTCCAATAATTCTGTCCATAAGAAACCCCCCTCAGATAATTTATTGCCTCAAGTTTTAGCTCGTTCATGTAGTTTAGGGTCTGCACATAGTAGCAATTCCACATCAAGATCATCTCTTCAAACTGGGAATGCATTTGAGAAGCATAAGGTTGATGTCTCTTATAGATTAAGTGGGGAATCCAATGGATGCCGGAGCATGGAGACAGAAAAGTTTGAGCAACATTCCCCTGCACCTTCATATATTTATAGTAGAAGTGAATCATTCTCAAGCTCCATTTCTAGTATTGATTATGCACATCCAGTTTCAAAAGAAGCACCAGAGATATTTAATAAGCATGAAAATGTGAAGGAGCTGTCTGGAGAAATCACAAATGGGTGTCCAGCTCCTCCAGCAAATAAAGAACCAGGGTCTCTTCCTCAGTTATCAGGAAAGCAATTTCAAAGCTCAGGGTCAAAATTAGGAAGCACAGAGAATAGAAATAATAATAGTAATATTCATTCGAAATTGCATTCCTTGCCTATTTGTAATTCGGAATTTGATGAGTTGACCACCACATCTTATGTCAATAAGTTGATTGAAGACCTTCACAGTCAATCCAATGAAGTGCAAACTAAGGCAGCAGAAGAATTGAGGCTTCTTTCAAAGCACAACATGGAAAACCGAATCATCATAGGGCAGTGTGGGGCTATCATTCCTTTACTTTCACTACTATATTCAGAAGTTAAGATAACACAAGAGCATGCTGTGACAGCTTTGCTGAATTTATCCATTAGTGAAGATAACAAGGCCTTGATTGTGGAAGCTGGAGCGATAGAACCGCTTATCCATGTTTTGAGAACAGGAAATGATGGGGCCAAGGAGAATTCTGCAGCAGCTCTATTTAGCCTCTCTGTTATAGAAAACTATAAGGCAAAGATTGGCCAGTCTGGTGCAGTGAAAGCTTTGGTTGATCTTCTAGGCTCAGGAACTCTTAGAGGAAAGAAAGATGCTGCCACTGCTTTATATAACCTATCAATATGTCATGAGAATATAGCTCGTATAGTTCAAGCTGGAGCTGTAAAGCATCTGGTTCAGTTAATGGACCCTGCTGCTGGAATGGTTGACAAGGCTGTTGCGCTTCTGGCAAACCTGTCAACAATTGCTGAGGGCAGATTAGCAATTGCAAGGGAAGGGGGCATCCCCTTACTAGTTGAGTTTGTTGATTCAGGTTCCCAAAGAGGAAGGGAAAATGCCGCATCTGTTCTTTTGCAGCTATGCCTTCATAGTACCAAGTTTTGTACTCTGGTTCTGCAAGAAGGAGCTGTACCTCCCTTAGTTGCATTATCTCAATCCGGTACACCAAGAGCAAAGGAAAAGGCACAACAGCTTCTGAGCCATTTTCGTAATCAGCGGGAAGGAGCTGCTGGGAAGGGAAAAGTTTGA 2388 0.3961 MPIARGQTDTTSVKCVVNSISRFIHLVSCQTVKPMPFQKNCNHMIGVLKHLKPVLDDVVDYKIYLDEKLHKECEELDIAVNEAREFIEKWSPKMSKILSVLRSGSLLMKIQISSVEICHMIFRSLQSPPPTSVLASLQNYLQELKCLKKEPAVGYIEEALRYQRENIEPHNENIKNIIELLGLKSNLEVFKESIAVEKERLDVEVNKVKGKLDEINEIVNLVCNMRDYAIKVERFEVKSGVSIPSYFICPLSLELMMDPVIVASGQTYERSSIQKWLDLGLIVCPKTHQRLTHTNLIPNYTVKAMIANWCEENNVKLLSNSKSNNSVHKKPPSDNLLPQVLARSCSLGSAHSSNSTSRSSLQTGNAFEKHKVDVSYRLSGESNGCRSMETEKFEQHSPAPSYIYSRSESFSSSISSIDYAHPVSKEAPEIFNKHENVKELSGEITNGCPAPPANKEPGSLPQLSGKQFQSSGSKLGSTENRNNNSNIHSKLHSLPICNSEFDELTTTSYVNKLIEDLHSQSNEVQTKAAEELRLLSKHNMENRIIIGQCGAIIPLLSLLYSEVKITQEHAVTALLNLSISEDNKALIVEAGAIEPLIHVLRTGNDGAKENSAAALFSLSVIENYKAKIGQSGAVKALVDLLGSGTLRGKKDAATALYNLSICHENIARIVQAGAVKHLVQLMDPAAGMVDKAVALLANLSTIAEGRLAIAREGGIPLLVEFVDSGSQRGRENAASVLLQLCLHSTKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAAGKGKV 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0621 795 MobiDBLite consensus disorder prediction 442 487 - -
Bisa03g0621 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 632 674 IPR000225 GO:0005515
Bisa03g0621 795 Pfam U-box domain 243 314 IPR003613 GO:0004842|GO:0016567
Bisa03g0621 795 SMART arm_5 580 620 IPR000225 GO:0005515
Bisa03g0621 795 SMART arm_5 621 661 IPR000225 GO:0005515
Bisa03g0621 795 SMART arm_5 662 701 IPR000225 GO:0005515
Bisa03g0621 795 SMART arm_5 539 579 IPR000225 GO:0005515
Bisa03g0621 795 SMART arm_5 702 742 IPR000225 GO:0005515
Bisa03g0621 795 Coils Coil 198 218 - -
Bisa03g0621 795 Gene3D - 649 790 IPR011989 -
Bisa03g0621 795 MobiDBLite consensus disorder prediction 460 487 - -
Bisa03g0621 795 CDD RING-Ubox_PUB 244 296 IPR045210 -
Bisa03g0621 795 PANTHER U BOX DOMAIN-CONTAINING 36 783 - -
Bisa03g0621 795 Pfam Armadillo/beta-catenin-like repeat 625 660 IPR000225 GO:0005515
Bisa03g0621 795 Pfam Armadillo/beta-catenin-like repeat 541 578 IPR000225 GO:0005515
Bisa03g0621 795 Pfam Armadillo/beta-catenin-like repeat 580 619 IPR000225 GO:0005515
Bisa03g0621 795 Pfam Armadillo/beta-catenin-like repeat 704 741 IPR000225 GO:0005515
Bisa03g0621 795 ProSiteProfiles U-box domain profile. 242 316 IPR003613 GO:0004842|GO:0016567
Bisa03g0621 795 SMART Ubox_2 246 309 IPR003613 GO:0004842|GO:0016567
Bisa03g0621 795 MobiDBLite consensus disorder prediction 381 400 - -
Bisa03g0621 795 Gene3D - 493 647 IPR011989 -
Bisa03g0621 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 673 714 IPR000225 GO:0005515
Bisa03g0621 795 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 550 592 IPR000225 GO:0005515
Bisa03g0621 795 SUPERFAMILY ARM repeat 503 782 IPR016024 -
Bisa03g0621 795 FunFam RING-type E3 ubiquitin transferase 240 316 - -
Bisa03g0621 795 SUPERFAMILY RING/U-box 241 317 - -
Bisa03g0621 795 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 317 IPR013083 -
Bisa03g0621 795 FunFam RING-type E3 ubiquitin transferase 494 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0621 Bisa-ChrBisa03 8047491 8051722 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0621 9 794 U-box Gene Family AT3G54790 54.010 0.0 729