Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0520 ATGAGTCGATCAGTTGACCCTACTTGCAGGACAAATTTCAATGTCTTTCTTAGCAGCGTTCCTGCTTTGACTATCAGACGCAGACCTCAGCCACGAGCTTTAGACTTCAGTAACTTGTCAGATTCTTCCCACCAAGACCAGCTGCTTTGCTTTCTCTTCACATTATCGTTTGAATTCAGTCAGAGGGTGAAGCAATTTCAGTTCAAAATGGAGCAGTATGAAATTCTAGAACAGATAGGCAAAGGTTCCTTTGGTTCTGCTCTGCTTGTGAGGCACAAGCATGAACGGAAAAGGTATGTCCTCAAGAAGATCCGCCTTGCCCGTCAAACTGATAGAACCCGTAGATCTGCCCACCAAGAGATGGAGCTTATCTCTAAAGTACAAAATCCATTTATAGTTGAATATAAGGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGCATCATCATAGGCTATTGTGAAGGTGGAGACATGGCTGAAGCTATTAAAAAGGCAAATGGTGTTCATTTTCCTGAAGAGAAGCTGTGTAAATGGCTGGTTCAACTCCTGATGGCACTTGATTACTTGCATGCAAACCATATCCTTCACCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGAGCAAGACATACGCCTAGGTGATTTTGGTCTGGCTAAATTATTGACTTCTGATGATCTGGCGTCCTCGGTTGTCGGGACCCCGAGTTACATGTGTCCAGAGCTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGTTGCTGTATATATGAAATGGCTGCCCACAAGCCAGCTTTTAAAGCTTTTGATATGCAAGCTTTGATTAACAAAATAAACAAGTCAATAGTGGCTCCTCTCCCAACCATGTATTCCGGCGCTTTTCGAGGGCTTGTCAAAAGTATGCTACGGAAAAATCCAGAGCTCAGACCAAGTGCTGCAGAGTTACTAAATCATCCGCATCTTCAGCCTCACATTCTTCAAATTCACCTGAAACTAAATAGCCCCAGAAGAAGTACTTTTCCATTCCAATGGCCAGAGTCAAACTACATAGGGAGAACTCGGTTTTTGGAGCCAGAATCTGTTTCTACCCTTTCTGATAGAGATAAACGCTTGTCATTCAGCAATGACAGAGCCTTGAATCCTAGTATTTCTGGAACTGAAAAAGATTCGCAGTGTTCTACTCAAAATGCACATGGATCTTCTGCTTGTTCTAAGGAGAAACTCTATGAACGCTCTGTTGGCTGTGTCCGTGAAGAATTCATAACTAAAAAGTCAAAAGCCACAAAGTTCTCAACTGTTGATAGTAGTACCCCTAGACTGAGAGCAGCTAAGGGTTATGCCACCCCCAGAAAGCAGATAACTCCTTCAAAAATATTTCATACTGGTTCAAAGCGTGATTCACTTCCCGTGTCTCATACTCCAGCGGGAAATTCTTCCCCACCATCACGTAGAGCATCCCTTCCACTGCCTACGAGAATCATGGCCACAGCAACCCCTTATAGGGCCAAAGTTGGCCTCCTCAGAACTTTGGAGTCTCCAGATGTTTCTGTCGATGCACCACGAATTGACAAGATGGCGGAATTCCCTCTTGCATCTTCTGAGGATCCTATCCTCATCGTCCCCAGAACGTCATCAACATCCGCTTGCTGCTTTTCTAGTTCACCAGTTGGTGCTGACCGCTCAATCACAAAGGACAAGTGTACAATCCAGGTAGTGGACAAAGCCATGGAGGTCCCTGCCAACGTGAGTGATGCTGGTCCTGGAGCTCCAGGATGTGGAAGTGAATGTTCTGAGTATGTTAGAACTGGTGCTTCAAGCCGTTCCTCTGCAGACTCACGACAGCGTAGGTTTGACACCTCGTCTTACCAGCAACGTGCGGAGGCATTGGAAGGTTTGCTTGAATTCAGTGCGAGGCTCCTACAACAACAAAGGTTTGAAGAACTTGGGGTGTTGTTGAAGCCATTTGGACCAGAGAAGGTTTCTCCCAGAGAAACAGCTATTTGGTTGACAAAGAGCTTCAAAGAAACTGTAGTGTAA 2055 0.4462 MSRSVDPTCRTNFNVFLSSVPALTIRRRPQPRALDFSNLSDSSHQDQLLCFLFTLSFEFSQRVKQFQFKMEQYEILEQIGKGSFGSALLVRHKHERKRYVLKKIRLARQTDRTRRSAHQEMELISKVQNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGVHFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKEQDIRLGDFGLAKLLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDMQALINKINKSIVAPLPTMYSGAFRGLVKSMLRKNPELRPSAAELLNHPHLQPHILQIHLKLNSPRRSTFPFQWPESNYIGRTRFLEPESVSTLSDRDKRLSFSNDRALNPSISGTEKDSQCSTQNAHGSSACSKEKLYERSVGCVREEFITKKSKATKFSTVDSSTPRLRAAKGYATPRKQITPSKIFHTGSKRDSLPVSHTPAGNSSPPSRRASLPLPTRIMATATPYRAKVGLLRTLESPDVSVDAPRIDKMAEFPLASSEDPILIVPRTSSTSACCFSSSPVGADRSITKDKCTIQVVDKAMEVPANVSDAGPGAPGCGSECSEYVRTGASSRSSADSRQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETVV 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0520 684 FunFam Serine/threonine-protein kinase Nek3 155 401 - -
Bisa03g0520 684 Pfam Protein kinase domain 73 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa03g0520 684 MobiDBLite consensus disorder prediction 460 491 - -
Bisa03g0520 684 FunFam Serine/threonine-protein kinase Nek2 70 152 - -
Bisa03g0520 684 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Bisa03g0520 684 SMART serkin_6 73 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa03g0520 684 MobiDBLite consensus disorder prediction 381 409 - -
Bisa03g0520 684 SUPERFAMILY Protein kinase-like (PK-like) 70 384 IPR011009 -
Bisa03g0520 684 CDD STKc_Nek 72 327 - -
Bisa03g0520 684 MobiDBLite consensus disorder prediction 440 493 - -
Bisa03g0520 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Bisa03g0520 684 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 70 640 - -
Bisa03g0520 684 ProSiteProfiles Protein kinase domain profile. 73 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bisa03g0520 684 Gene3D Phosphorylase Kinase; domain 1 55 152 - -
Bisa03g0520 684 MobiDBLite consensus disorder prediction 381 408 - -
Bisa03g0520 684 Gene3D Transferase(Phosphotransferase) domain 1 153 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0520 Bisa-ChrBisa03 6552797 6560288 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0520 79 328 MAP Kinase Kinase Kinase AT1G53570 31.765 5.09e-37 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Bisa03g0520 Pkinase 9.7e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0520 03 6552797 6560288 Bisa03g0520 03 6552797 6560288 ECH