Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0478 ATGGGAGCATATAAGATAGAGACATTTTATTTCATACCCTTTTGCCTGACACATAGCCACACATTTATTCCCAGATTACCCTCATATTCTCATATTATTTTCCCCAAAGTTGGAACCGCCATGGATCTCCACCAGCGTCAAACCTCTGATGGTAGACGGAGCTTGAAGCGGAAGCTGGAACTAGAATTCGCAGACGAAGCAGCAGATCAAGTAGGAGCCGATCGTAAGGTGTTGGTTATTGAATCTCAAGAGCCTCGTCAGGATCTGTTGGGTGAAGTTGCGTCGCAAGTGAACGTTCTCAGCTCCAGCGTCTCATCATCTCAATCGGATCGTGTTGCGGCCAAGCGTGCCGTCCATGTTCTCTGTGAACTCGCAAAGAACGAGGAAATTGTGAATAATATAGTAGACTGTGGAGCTGTTCCTGCTCTGGTGAGGCATCTACAAGCACCAGAACCAATTGGAGGAGGTGATGGTGTTCCCAAGCCTCACGAGTATGAGGTGGAAAAAGGAAGTGCTTTCGTCCTCGGGCTTATTGCGGTTAAACCAGAGCATCAACAACTCATTGTTGATGCTGGAGCTTTGCCCTATCTTATAGAATCGTTAAAGAGGCACAAGACTTGTAGCAATTCTCGGTCACTGACAGGTCTTATTAGGAGAGCAGCTGATGCGATCACAAACCTTGCACACGAAAATAGTAGAGTTAAAATCCGCGTCAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGATTTCGAAGATGCAAAAGTACAAAGGGCAGCTGCAGGGGCTTTACGAACTCTTGCATTTAAAAATGATGAAAACAAGAACCAGATTGTTGGATGCAATGCATTACCCACTCTTATACTCATGCTTGGATCGGAGGATACTGCAATACATTCTGAAGCAGTTGGCGTGATCGGAAATCTGGTCCACTCTTCCCCAAATATAAAGAAGGATGTTCTCCTAGCTGGAGCTCTACAACCTGTCATTGGATTACTTAGTTCTAGCTGTTCGGAGAGTCAAAGAGAAGCAGCTCTTTTAATTGGTCAATTTGCTGCAACAGATTCAGAATGCAAGGTCCAAATTGCTCAAAGAGGGGCTATCCAACCATTAATTGACATGCTCAAGTCTCCAGACGCACAGCTCAGGGAAATGTCAGCTTTTGCGCTTGGGAGGTTGGCACAGGACAAGCACAATCAAGCTGGTATTGTTCAACATGGAGGTATAGAGCCTTTGCTCATTCTTCTTGGCTCGAAGAATGGACCTATCCAACATAATGCAGCTTTTGCTTTATATGGTCTTGCTGATAATGAGGAAAATGTTGCGGATATTATTAAGGCTGGCGGTGTTCAAAAACTACAGGATGGAGATTTCAAAGTTCAACCTACTCAAGAGTGTGTTGGAAAGACATTGAAAAGATTAGAGGAGAAGATGAGTGGACGAGTGCTGAAACAACTATTGTATCTTACGCGTTATGCAGAAAAGGCTGTTCAAAGACGCGTGGCTCTGGCTCTTGCTCATTTATGTGCCCCTGATGATCGGAAATTTATTTTCATTGATAACAATGGACTTGAGTTGCTGCTGGATCTTTTGGAATCTACAAACCTCAAGCAGAAACGTGATGCTTCATTTGCGCTTCACACGTTGGCCACCAAAACCACGTCTGTCTCTCTTGTTGATGCTGCTCCTCCATCCCCGACTCCGCAGGTATACTTGGGCGAGCAATATGTAAACAATCCGACACTTTCTGATGTCACATTTTTAGTTGAAGGTAAACGGTTCTATGCTCACAGAATTTGTCTGCTTGCTTCCTCTGATATCTTTCGTGCAATGTTTGATGGTGGTTACAGGGAAAGGGAAGCAAAAGATATTGAGATCCCCAATATTAAATGGGACGTCTTTGAATTGATGATGAGATTCATATACACTGGAACAGTAGATGTTAATTTGGATATTGCTCAGGATCTCCTCAGAGCTGCTGATCAATATCTTCTTGAGGGTCTTAAGCGCCTCTGTGAGTACGCAATTGCTCAGGATATTACTGTGGAAAATGTGTCACTAATGTACGAGTTATCAGACGCATTCAATGCTATGTCATTAAGGCGAGCATGCATACTATTTGTATTGAACCAATTTGACAAACTGAGCGCCAAACCATGGTATAGCCGTCTAATGCGTTGCATCTTGCCGGATGTACGCGAATTTTTCAGAAGTTTACTTACCAAGCCAACTCCATCTGACTCGTGA 2253 0.4394 MGAYKIETFYFIPFCLTHSHTFIPRLPSYSHIIFPKVGTAMDLHQRQTSDGRRSLKRKLELEFADEAADQVGADRKVLVIESQEPRQDLLGEVASQVNVLSSSVSSSQSDRVAAKRAVHVLCELAKNEEIVNNIVDCGAVPALVRHLQAPEPIGGGDGVPKPHEYEVEKGSAFVLGLIAVKPEHQQLIVDAGALPYLIESLKRHKTCSNSRSLTGLIRRAADAITNLAHENSRVKIRVRMEGGIPPLVELLDFEDAKVQRAAAGALRTLAFKNDENKNQIVGCNALPTLILMLGSEDTAIHSEAVGVIGNLVHSSPNIKKDVLLAGALQPVIGLLSSSCSESQREAALLIGQFAATDSECKVQIAQRGAIQPLIDMLKSPDAQLREMSAFALGRLAQDKHNQAGIVQHGGIEPLLILLGSKNGPIQHNAAFALYGLADNEENVADIIKAGGVQKLQDGDFKVQPTQECVGKTLKRLEEKMSGRVLKQLLYLTRYAEKAVQRRVALALAHLCAPDDRKFIFIDNNGLELLLDLLESTNLKQKRDASFALHTLATKTTSVSLVDAAPPSPTPQVYLGEQYVNNPTLSDVTFLVEGKRFYAHRICLLASSDIFRAMFDGGYREREAKDIEIPNIKWDVFELMMRFIYTGTVDVNLDIAQDLLRAADQYLLEGLKRLCEYAIAQDITVENVSLMYELSDAFNAMSLRRACILFVLNQFDKLSAKPWYSRLMRCILPDVREFFRSLLTKPTPSDS 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0478 750 SMART arm_5 513 553 IPR000225 GO:0005515
Bisa03g0478 750 SMART arm_5 231 271 IPR000225 GO:0005515
Bisa03g0478 750 SMART arm_5 181 229 IPR000225 GO:0005515
Bisa03g0478 750 SMART arm_5 398 438 IPR000225 GO:0005515
Bisa03g0478 750 SMART arm_5 127 180 IPR000225 GO:0005515
Bisa03g0478 750 SMART arm_5 315 355 IPR000225 GO:0005515
Bisa03g0478 750 SMART arm_5 357 397 IPR000225 GO:0005515
Bisa03g0478 750 SMART arm_5 273 313 IPR000225 GO:0005515
Bisa03g0478 750 CDD BTB_POZ_ARIA_plant 572 687 - -
Bisa03g0478 750 ProSiteProfiles BTB domain profile. 585 652 IPR000210 GO:0005515
Bisa03g0478 750 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 284 326 IPR000225 GO:0005515
Bisa03g0478 750 Pfam Armadillo/beta-catenin-like repeat 231 270 IPR000225 GO:0005515
Bisa03g0478 750 Pfam Armadillo/beta-catenin-like repeat 357 396 IPR000225 GO:0005515
Bisa03g0478 750 Pfam Armadillo/beta-catenin-like repeat 273 312 IPR000225 GO:0005515
Bisa03g0478 750 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 368 410 IPR000225 GO:0005515
Bisa03g0478 750 Pfam BTB/POZ domain 578 680 IPR000210 GO:0005515
Bisa03g0478 750 Gene3D - 67 399 IPR011989 -
Bisa03g0478 750 Gene3D - 400 458 IPR011989 -
Bisa03g0478 750 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 409 451 IPR000225 GO:0005515
Bisa03g0478 750 Gene3D Potassium Channel Kv1.1; Chain A 565 711 IPR011333 -
Bisa03g0478 750 SUPERFAMILY ARM repeat 97 457 IPR016024 -
Bisa03g0478 750 SUPERFAMILY ARM repeat 481 554 IPR016024 -
Bisa03g0478 750 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 138 193 IPR000225 GO:0005515
Bisa03g0478 750 Gene3D - 479 564 IPR011989 -
Bisa03g0478 750 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 45 746 IPR044282 -
Bisa03g0478 750 SUPERFAMILY POZ domain 576 679 IPR011333 -
Bisa03g0478 750 SMART BTB_4 585 682 IPR000210 GO:0005515
Bisa03g0478 750 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 242 277 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0478 Bisa-ChrBisa03 6005981 6011974 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0478 328 555 U-box Gene Family AT5G67340 24.370 1.96e-08 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Bisa03g0478 BTB 1.2e-26 CL0033