LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa03g0421	ATGAAGGAGAAGGCTGATTCCCCAGTTGGGGTTCTTGAGGACTATTTTAGAAGCTCAGAGTCAGACACAAGTTCATCCAAAGAACCCCCCGGAGATTCTGAGGCTCAAGACAAGTCAAAGGCTTCTTCTAAATGGAGTGGATTTCTCCAACTTCTGAGGACCAGATCAAAAAAACCCGCACCTTCCTTGCATCCTCTTAATGTTCTGAAGCTCTCAAAAAGGATGAGCAGAAGTTTGAGAGAGACCATATTTCCAAATTCTCGCTTGGATTCAGACTCTTCCCTCCACAATTCACCATGGAAGATCTTTACTCACAAGGAGATTCTTCTCGCAACCAGTTCTTTCAGTCAAGAAAATCTGATTGGGAAAGGTGGGTATGCCGAAGTGTACAAAGGGTGCTTGCCAAATGGTCAGCTTGTAGCAGTCAAAAAGCTGACACGTGGAAGCCCAGATGAGATCATAGGGGACTTCTTATCAGAACTTGGCATAATGGCACATGTCAACCATCCCAATACTGCTAAACTAGTTGGCTATGGAGTCGAAGGAGGAATGTACCTTGTTCTGGAATTGTCTGAAAAAGGAAGTTTAGCTTCAGTCCTTCATGGTAATTCGAAGGAAAAATTGCCGTGGGGTATTAGGTACAAAATTGCATTAGGATCAGCCAAGGGAATATTATATCTTCACGAGGGGTGTCAAAGAAGAATTATCCACAGAGATATAAAGGCAGCGAATATCTTGCTGACAGAGGACTATGAGCCTCAGATTTGTGATTACGGGCTTGCAAAATGGCTGCCAGAGAATTGGACTCACCACACCGTTTCAAAATTTGAGGGCACCTTTGGTTATCTTGCTCCCGAGTACTTACTTCATGGGATAGTAGATGAGAAAACAGACGTATTTGCTTTTGGTGTTTTGCTGTTAGAATTAGTGACTGGACGGCGAGCTCTTGATTATTCACAGCAAAGCCTTGTTCTGTGGGCAAAGCCATTGCTGAAGAAGAATAACATTAGGGAGCTGATTGATGCCTCACTAGGTGATGACTATGACTCTCGACAGATAAATCTTGTGCTCTTGGCTGCTTCTTTATGCATCCATCATTCCTCAATTCGCAGACCCTCTATGAGACAGGTTCTGCAGCTTCTGAGTGGCAACCTTAGCTGCTTTAAGCGCATGAAGAAAACTCGATTGCCTTTTTTTCGAAAACTCTTCCAGGAAGAGCTCCTTGATTCTGAATAG	1236	0.4369	MKEKADSPVGVLEDYFRSSESDTSSSKEPPGDSEAQDKSKASSKWSGFLQLLRTRSKKPAPSLHPLNVLKLSKRMSRSLRETIFPNSRLDSDSSLHNSPWKIFTHKEILLATSSFSQENLIGKGGYAEVYKGCLPNGQLVAVKKLTRGSPDEIIGDFLSELGIMAHVNHPNTAKLVGYGVEGGMYLVLELSEKGSLASVLHGNSKEKLPWGIRYKIALGSAKGILYLHEGCQRRIIHRDIKAANILLTEDYEPQICDYGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVTGRRALDYSQQSLVLWAKPLLKKNNIRELIDASLGDDYDSRQINLVLLAASLCIHHSSIRRPSMRQVLQLLSGNLSCFKRMKKTRLPFFRKLFQEELLDSE	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa03g0421	411	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	235	247	IPR008271	GO:0004672\|GO:0006468
	Bisa03g0421	411	ProSitePatterns	Protein kinases ATP-binding region signature.	121	144	IPR017441	GO:0005524
	Bisa03g0421	411	SMART	serkin_6	115	388	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g0421	411	FunFam	receptor-like cytosolic serine/threonine-protein kinase RBK2	192	395	-	-
	Bisa03g0421	411	SUPERFAMILY	Protein kinase-like (PK-like)	93	381	IPR011009	-
	Bisa03g0421	411	FunFam	Receptor-like cytosolic serine/threonine-protein kinase RBK2	86	189	-	-
	Bisa03g0421	411	ProSiteProfiles	Protein kinase domain profile.	115	399	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g0421	411	Gene3D	Transferase(Phosphotransferase) domain 1	192	395	-	-
	Bisa03g0421	411	Gene3D	Phosphorylase Kinase; domain 1	86	189	-	-
	Bisa03g0421	411	MobiDBLite	consensus disorder prediction	1	44	-	-
	Bisa03g0421	411	Pfam	Protein kinase domain	116	379	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa03g0421	411	PANTHER	OS08G0249100 PROTEIN	4	407	IPR046958	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa03g0421	Bisa-ChrBisa03	5315468	5317247	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa03g0421	92	381	Trihelix Transcription Factor Family	AT1G70460	43.189	4.64e-70	232

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Bisa03g0421		Pkinase	1.8e-40	CL0016