Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0396 ATGGATGGCACAGCTGGAGCACAAATAGGGTCTGCCGCTAACTCCCCAAATAATGCTACTGCAACTCCTGCATGCAACTATGGCGGCTCACCCTTTCAAGGCGAGGAAGATGAATTGTACGCTGAACTGTGGCAAGCATGCGCCGGCCCTTCTGTTCAAGTTCCTCGCGCTGGTGATTTGGTTTACTACTTTCCTCAGGGTCACTTAGAACAGGTCGCTGACTTTACTCAACGAGATGGTCACATGGAAATTCCTGTATATGATTTGCCGTCTAAGATCCTTTGCGAGGTCGTGAGTGTTCAGCTGAAGGCTGAGGCTTACACCGATGAAGTCTTTGCTCAAATTACTTTAATTCCAGTGTCAAAGCAACATGAACTTACTTCATTGGACAAAGCTTCTCGTCGGTTACCCACCAGAACTGCTGCTGGCTCCTTTAGTAAGAAACTGACTCTATCAGATACGAGTACACATGGTGGATTCTCCATTCCTAAACGACTTGCTGACGAATGTTTCCCTCCTCTGGATATGTCTCAGCAAACGCCAGCACAAGAGCTTGTTGTAAAGGACTTGCATGGCTTTCTTTGGCATTTTCGCCATATCTACCGCGGTCAGCCTAAACGACACTTGCTTACTAGTGGCTGGAGCACATTCGTGAATTCAAAAAGGCTTGTTGCTGGAGATACATGCATTTTCCTTAGTGGGAAAAACGGGGAACTTTATATAGGGATACGTCGAGCAATGAAACAACATATCAATGCATCTACATCCACATCTGTAATATCTGGCCATAGCATGCAACTTGGAATACTGACCAGTGCTTCCTTTGCTGTTACTGCCGGATCGCCATTCATTGTATACTACCGTCCATGGACTAATCCCTCTGAGTTCATTGTTCCCCTGAATCACTACATGAAATCAACTAAAGGGGACTACTCATCTGGAATGAGGATACAAATGCAGTTTGAAGCTGAGGAATCTCCGAGGAGATATGCTGGTACCATAATTGGTATTGATGATATCGACAGCATTAGGTGGCCTGGTTCCGAATGGAGATGTCTCAAAGTGCAATGGGATGCCATGCTAGATATGCGCCCTGAAAGGGTTTGTCCCTGGAACATTGAGCCCTTGGAATCTGCCAGTCTACCCCTGCCAAAGAGGCGTATAGTCAGCTCATTATTCCCTGAATCATTTGGCATCGATCTAAACTCAGTCAAGCATGCATCTCAGAGATCTGAAAGGGACTTACAAGGTCAAGATTACAATGTAGGTTCTCAAAAACTATTAATAGATGTTCAACTGCCATCAAGTGCCACACTACATGACTGGAGGATGAAGCATCAGCTGCACTTTCAAATAAAAAACCCTCCTGGGCATTCTCTTGGCAATCTAATATCATTTCCAAATGATGACATTTCGACTTCAAGCATCCCCAAACAACCCCCAATCTTTACCACTTATGAAGTGTGTAATAATGTCGCTGCCAGCAGGTACTGTTCACTCTCAAATGTGAACTCCAATGATTCTGAACCCCAGGGATGGCGGGCGTCTGTATCTAGGGATGAGAATGAAGTTCCCTTTGGCCAACAAGGCGGTTGTAGTAAAATTGCATGCAAAATTTTCGGGGTTTGCTTAAACAACCCGGAGCTCCCTTCACCACAAGTTGCTGCTTCCAGCAATACCTCAAGTCCTCTATCTGTTCCTCCAATGTCTCAGTCAAGCATTTCTGCACCTATCCCGGTTTCCAAACCATCCAAGAGTATTTCAGGTGCTACCTCAAAGAAGAAATGCAAGAAATGTTGCTCGGTTAATAGTAGGACTTGCACAAAGGTACTTAAGCATGGAAGTGCTCTAGGCAGATCAATTGACCTCTCACGTATTCCTGGGTATGATGAACTCGTTTCTGTACTCGACTTGATGTTTGATTTCAAAGGAAGCTTAATAAATGGAAGCAGTGGATGGCATGTGGTCCCCGTAGATGATGATGGGGATATGATGCTGTTTGGAGATTACCCTTGGCAGTTAAGTATTGAATCAGTAGTAGTACGAAAACAAAATTATCCTTTTACTTTGGTATTGTTTCTGTGCTGGACCAATTTAAGCGATATCTAA 2109 0.4448 MDGTAGAQIGSAANSPNNATATPACNYGGSPFQGEEDELYAELWQACAGPSVQVPRAGDLVYYFPQGHLEQVADFTQRDGHMEIPVYDLPSKILCEVVSVQLKAEAYTDEVFAQITLIPVSKQHELTSLDKASRRLPTRTAAGSFSKKLTLSDTSTHGGFSIPKRLADECFPPLDMSQQTPAQELVVKDLHGFLWHFRHIYRGQPKRHLLTSGWSTFVNSKRLVAGDTCIFLSGKNGELYIGIRRAMKQHINASTSTSVISGHSMQLGILTSASFAVTAGSPFIVYYRPWTNPSEFIVPLNHYMKSTKGDYSSGMRIQMQFEAEESPRRYAGTIIGIDDIDSIRWPGSEWRCLKVQWDAMLDMRPERVCPWNIEPLESASLPLPKRRIVSSLFPESFGIDLNSVKHASQRSERDLQGQDYNVGSQKLLIDVQLPSSATLHDWRMKHQLHFQIKNPPGHSLGNLISFPNDDISTSSIPKQPPIFTTYEVCNNVAASRYCSLSNVNSNDSEPQGWRASVSRDENEVPFGQQGGCSKIACKIFGVCLNNPELPSPQVAASSNTSSPLSVPPMSQSSISAPIPVSKPSKSISGATSKKKCKKCCSVNSRTCTKVLKHGSALGRSIDLSRIPGYDELVSVLDLMFDFKGSLINGSSGWHVVPVDDDGDMMLFGDYPWQLSIESVVVRKQNYPFTLVLFLCWTNLSDI 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0396 702 FunFam Auxin response factor 310 380 - -
Bisa03g0396 702 ProSiteProfiles B3 DNA-binding domain profile. 145 247 IPR003340 GO:0003677
Bisa03g0396 702 FunFam Auxin response factor 143 247 - -
Bisa03g0396 702 Pfam B3 DNA binding domain 145 246 IPR003340 GO:0003677
Bisa03g0396 702 SUPERFAMILY DNA-binding pseudobarrel domain 142 273 IPR015300 -
Bisa03g0396 702 CDD B3_DNA 144 245 IPR003340 GO:0003677
Bisa03g0396 702 SUPERFAMILY CAD & PB1 domains 606 679 - -
Bisa03g0396 702 Gene3D - 310 381 - -
Bisa03g0396 702 MobiDBLite consensus disorder prediction 554 590 - -
Bisa03g0396 702 Gene3D - 143 247 IPR015300 -
Bisa03g0396 702 ProSiteProfiles PB1 domain profile. 605 686 IPR000270 GO:0005515
Bisa03g0396 702 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 37 679 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bisa03g0396 702 Gene3D - 600 684 - -
Bisa03g0396 702 Pfam Auxin response factor 274 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bisa03g0396 702 SMART B3_2 145 247 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0396 Bisa-ChrBisa03 5063327 5072129 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0396 537 673 B3 DNA Binding Superfamily AT5G62000 34.459 5.45e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa03g0396 B3 1.1e-21 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0396 03 5063327 5072129 Bisa03g0396 03 5063327 5072129 ECH