Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0369 ATGGAATTGACGAATGAAACAGATCCGAACGCTGAAATAATAGCACTATCACCGACGACACTAATGGCGACAAACAGATTCGTGTGCGAGATATGCAACAAAGGGTTTCAGAGGGACCAGAACCTGCAGCTGCACCGAAGAGGACACAATCTGCCATGGAAGCTGAGGCAGAGAACGAGCACGGAGGTGAGGAAGAGGGTGTACGTGTGCCCGGAGCCCTCCTGCGTGCATCATAACCCAGCTCGAGCTCTGGGAGACCTCACTGGCATCAAGAAGCATTACAGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGCGATAAGTGCTCTAAGAGATACGCCGTTCAGTCTGACTGGAAGGCCCACCACAAGACCTGTGGTACCAGAGAGTACAAATGCGATTGTGGCACCATCTTTTCCAGGAGAGATAGTTTCATCACGCACAGAGCTTTTTGTGATGCCCTAACCGAAGAAAACAACCGAATGAATCAGGGATTGACGAGTGGCATCCAACCCGACTTACAAAATCTTATGTCCACAATAACTCCAAGCACCTCCTCGGAATTCAACAGCTACGAGCCCATTAAGAACCCACTCAGATCCGTCTCCCAAGAACTCGGCCCAAGCCCATTCAAGCCCATGAGCGTGAGTGGGCCCATGTTCTCCACCGCTTCGGCATCCCTCTTCGCTGGCCCAAAGCCCATCTCGTCCTCTTCCTCGACCCTCCAGCTCAGCCCCAACACCTCGTCTGGCGGTGGCATCAATTACTTCCAAGACACCAAAAACGGAGGCCCAATTCTTCCTGGGTCGGCCCACATGTCCGCAACGGCCTTATTGCAGAAAGCAGCCCAAATGGGTGCTACAGCCAGCAACGGCATCAACTCTCCCATGGTGCAAAAGAGCTTCGTTAGCAGTATGGGTGGTCCTGATCATGACATCTCTTCTTCCATCAATAAACCACCATTCTCGGGTCCTGTTAACCCCTCCTATGACCATTTCAATCCTCATCCTGATCAATCTAACATGGTCCGGTTGTTTCAGAAAAGCCCACAAGAAATCTCACAGCTATTTGATGCTAATATTCCTGCTGCTGGATCTACAATGAACGATATGGGCATGTTCAGCCAGATGTTCATGGGGAGTGACGAGAACCCAGGGTTGATGATGAAGAACAATGTGGAACAAGAGAGTAGTGGTAGTTCGCGTTTGATGCATGGGAGAGAGGTGGGAGAAGGGAACCAAATGGGGACAATGGGAATGGTTCATGATTTCCTGGGAGTGGGGGGCTCAGGGAATTTGCAGGAAGCACAGCAGAATGAACATCAGAGATTGGAGTTAGAAGCGATGAGCCACCAGAGGTTATCAGTAATGAATCACTTTCAACATCACCTTCCACGTGGGGATGAACATTTGGATAAACCCATTTGGGATGTTTGA 1434 0.5035 MELTNETDPNAEIIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHHKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRMNQGLTSGIQPDLQNLMSTITPSTSSEFNSYEPIKNPLRSVSQELGPSPFKPMSVSGPMFSTASASLFAGPKPISSSSSTLQLSPNTSSGGGINYFQDTKNGGPILPGSAHMSATALLQKAAQMGATASNGINSPMVQKSFVSSMGGPDHDISSSINKPPFSGPVNPSYDHFNPHPDQSNMVRLFQKSPQEISQLFDANIPAAGSTMNDMGMFSQMFMGSDENPGLMMKNNVEQESSGSSRLMHGREVGEGNQMGTMGMVHDFLGVGGSGNLQEAQQNEHQRLELEAMSHQRLSVMNHFQHHLPRGDEHLDKPIWDV 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0369 477 Coils Coil 433 453 - -
Bisa03g0369 477 Gene3D Classic Zinc Finger 4 72 - -
Bisa03g0369 477 Pfam Zinc finger, C2H2 type 27 49 IPR013087 -
Bisa03g0369 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 49 IPR013087 -
Bisa03g0369 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 442 IPR031140 -
Bisa03g0369 477 SUPERFAMILY beta-beta-alpha zinc fingers 26 123 IPR036236 -
Bisa03g0369 477 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Bisa03g0369 477 SMART c2h2final6 68 98 IPR013087 -
Bisa03g0369 477 SMART c2h2final6 27 49 IPR013087 -
Bisa03g0369 477 SMART c2h2final6 103 123 IPR013087 -
Bisa03g0369 477 FunFam protein indeterminate-domain 5, chloroplastic-like 81 160 - -
Bisa03g0369 477 FunFam protein indeterminate-domain 12-like 6 74 - -
Bisa03g0369 477 Gene3D Classic Zinc Finger 81 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0369 Bisa-ChrBisa03 4698436 4700655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0369 8 291 IDZ Gene Family AT3G50700 55.921 1.95e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa03g0369 zf-C2H2 0.0048 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa03g0369 03 4698436 4700655 Bisa03g0369 03 4698436 4700655 ECH