Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa03g0338 ATGGATCACACAAAACGCGCACAAGGCGAGAGCGTGCGGCGTATCTCCCTCAATCCCGTTCAAAGAGGAAAGATGAGTCGACGCGCTAGCAGAACTGTCTACGTTGGGAATCTACCGGGTGATATTCGTGAAAGAGAAGTGGAAGATCTGTTTCTCAAGTATGGACACATAACTCACATTGACTTGAAGGTTCCTCCAAGGCCCCCTGGTTATGCATTTGTAGAGTTTGAGGATGCTCAAGATGCTGAAGATGCAATTCGTGGTCGTGATGGTTACGATTTTGATGGGCACCGATTAAGGGTAGAGCCTGCACATGGCGGACGTGGTCATTCATCATCAAGAGATAGACATAGTAGTCACAGCAACGGTCGGGGTGGACGTGGAGTTTCTAGGCGCTCTGAGTATCGTGTTCTTGTCACTGGATTGCCGTCTTCTGCTTCCTGGCAGGATCTGAAAGATCACATGAGAAAGGCAGGGGATGTTTGTTTCTCTCAAGTTTTTCATGATGGAAGAGGTACAACTGGGATTGTGGATTACACAAACTATGACGACATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGGAATGCATTTTCCAGAGCTTATGTTCGGGTGAGGGAATATGATTCAAGGCGGGACTCCTCTCGAAGTCCTAGCCGCGGCCGATCTTATTCTAGGGGAAGGAGTTATAGCCGCAGTCGTAGCCGTAGTTATAGTCGAGGGCAGAGCCAGAGTAAATCTCCGAAGGGGAAATCTTCCCAGCATTCACCTGCTAGATCTTCAAGATCCGTTTCACGCTCTCGATCTCGCTCTAAGTCAAGATCCCGTTCTTTATCAGGATATGGATACTTGCAGCAAACTGGGAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTGCCTGCAACTCAATTTGTTGTGGAGATTGGGAACCAAGGAGATCATGGATTGCTATTTTAG 972 0.4722 MDHTKRAQGESVRRISLNPVQRGKMSRRASRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRAYVRVREYDSRRDSSRSPSRGRSYSRGRSYSRSRSRSYSRGQSQSKSPKGKSSQHSPARSSRSVSRSRSRSKSRSRSLSGYGYLQQTGNWKLGTWWDLVQLPATQFVVEIGNQGDHGLLF 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa03g0338 323 CDD RRM1_SF2_plant_like 32 102 - -
Bisa03g0338 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 135 213 IPR000504 GO:0003723
Bisa03g0338 323 CDD RRM2_SF2_plant_like 135 210 - -
Bisa03g0338 323 MobiDBLite consensus disorder prediction 96 134 - -
Bisa03g0338 323 MobiDBLite consensus disorder prediction 223 267 - -
Bisa03g0338 323 MobiDBLite consensus disorder prediction 210 281 - -
Bisa03g0338 323 SMART rrm1_1 32 102 IPR000504 GO:0003723
Bisa03g0338 323 SMART rrm1_1 136 207 IPR000504 GO:0003723
Bisa03g0338 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 100 IPR000504 GO:0003723
Bisa03g0338 323 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 199 IPR000504 GO:0003723
Bisa03g0338 323 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 22 281 - -
Bisa03g0338 323 FunFam serine/arginine-rich splicing factor SR34A-like 135 212 - -
Bisa03g0338 323 MobiDBLite consensus disorder prediction 96 131 - -
Bisa03g0338 323 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 25 134 - -
Bisa03g0338 323 Gene3D - 135 212 IPR012677 -
Bisa03g0338 323 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 106 IPR000504 GO:0003723
Bisa03g0338 323 SUPERFAMILY RNA-binding domain, RBD 30 202 IPR035979 GO:0003676
Bisa03g0338 323 Gene3D - 4 134 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa03g0338 Bisa-ChrBisa03 4460031 4463886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa03g0338 32 219 Eukaryotic Initiation Factors Gene Family AT4G34110 25.381 5.19e-06 46.2